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MELO3C035218 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035218
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:28893124..28896445
RNA-Seq ExpressionMELO3C035218
SyntenyMELO3C035218
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.2e-2248.65Show/hide
Query:  FDSFSTKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLE
        +DS +T  +  L K  P      +    C+R++EDR HLFI CP A SIW LI    N N+    P +LC  +C W QKTKKN+IL +T A A+WNIWLE
Subjt:  FDSFSTKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLE

Query:  QNHRIFNDKNK
        +N RIFN K K
Subjt:  QNHRIFNDKNK

TYK02997.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-2358.82Show/hide
Query:  CRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLEQNHRIFNDKNKAS
        C+R+EEDR HLFI CPFA SIW  I    + N+    P ELC  +C WNQKTKKN+IL +T A A+WNIWLE+N RIFN K K +
Subjt:  CRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLEQNHRIFNDKNKAS

TYK10356.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.6e-2352.83Show/hide
Query:  TKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLEQNHRI
        TKR  +L      CV        C+R+EEDR HLFI CP A SIWNLI      N+    P +LC  +C W QKTKKNIIL +T A A+WNIWLE+N RI
Subjt:  TKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLEQNHRI

Query:  FNDKNK
        FN K K
Subjt:  FNDKNK

XP_008458268.1 PREDICTED: uncharacterized protein LOC103497737 [Cucumis melo]1.7e-11597.29Show/hide
Query:  MLYFKCPYLPIEQALFTLSRINENGYFKSHPNLLIFSTSYADFPLTLVTLQLMPQFFMEYNCDSLYHYNIHIDHLYRLFKTARTKMLFQTFDFNLIDGRK
        MLYFKCPYLPIEQALFTLSRINENGYFKSHPNLLIFSTSYADFPLTLVTLQLMPQFFMEYNCDSLYHYNIHIDHLYRLFKTARTKMLFQTFDFNLIDGRK
Subjt:  MLYFKCPYLPIEQALFTLSRINENGYFKSHPNLLIFSTSYADFPLTLVTLQLMPQFFMEYNCDSLYHYNIHIDHLYRLFKTARTKMLFQTFDFNLIDGRK

Query:  SKKEG------DKRDSLASNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLMRDLNDHTARVTVARSSVRFTSSKMLNIGFTKQSGNCIIGGIKKVKD
        SKKEG      DKRDSLASNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLMRDLNDHTARVTVARSSVRFTSSKMLNIGFTKQSGNCIIGGIKKVKD
Subjt:  SKKEG------DKRDSLASNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLMRDLNDHTARVTVARSSVRFTSSKMLNIGFTKQSGNCIIGGIKKVKD

Query:  EIKFTITFRPVPFFDSFSTKR
        EIKFTITFRPVPFFDSFSTKR
Subjt:  EIKFTITFRPVPFFDSFSTKR

XP_031743963.1 uncharacterized protein LOC116404740 [Cucumis sativus]5.9e-10888.7Show/hide
Query:  MLYFKCPYLPIEQALFTLSRINENGYFKSHPNLLIFSTSYADFPLTLVTLQLMPQFFMEYNCDSLYHYNIHIDHLYRLFKTARTKMLFQTFDFNLIDGRK
        MLYFKCPYLPIEQALFTLSRINENGYFKS+PNLLIFSTSYADFPLTLVTLQL+PQFF +YNC++LYHYN+HIDHLYRLFKTARTKMLFQ+FDF LIDGRK
Subjt:  MLYFKCPYLPIEQALFTLSRINENGYFKSHPNLLIFSTSYADFPLTLVTLQLMPQFFMEYNCDSLYHYNIHIDHLYRLFKTARTKMLFQTFDFNLIDGRK

Query:  SKKEG------DKRDSLASNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLMRDLNDHTARVTVARSSVRFTSSKMLNIGFTKQSGNCIIGGIKKVKD
        SKKEG      DKRDSL SNVRTLDKLPLDTQ IPSIQYDAFFTMETELFKTL+RDLNDHTARVTVARSSVRFTSSK+LNIGFTKQS NCIIGGIKKVKD
Subjt:  SKKEG------DKRDSLASNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLMRDLNDHTARVTVARSSVRFTSSKMLNIGFTKQSGNCIIGGIKKVKD

Query:  EIKFTITFRPVPFFDSFSTKR----RTSLS
        E+KFTITFRPVPFFDSFSTKR    R SLS
Subjt:  EIKFTITFRPVPFFDSFSTKR----RTSLS

TrEMBL top hitse value%identityAlignment
A0A1S3C702 uncharacterized protein LOC1034977378.2e-11697.29Show/hide
Query:  MLYFKCPYLPIEQALFTLSRINENGYFKSHPNLLIFSTSYADFPLTLVTLQLMPQFFMEYNCDSLYHYNIHIDHLYRLFKTARTKMLFQTFDFNLIDGRK
        MLYFKCPYLPIEQALFTLSRINENGYFKSHPNLLIFSTSYADFPLTLVTLQLMPQFFMEYNCDSLYHYNIHIDHLYRLFKTARTKMLFQTFDFNLIDGRK
Subjt:  MLYFKCPYLPIEQALFTLSRINENGYFKSHPNLLIFSTSYADFPLTLVTLQLMPQFFMEYNCDSLYHYNIHIDHLYRLFKTARTKMLFQTFDFNLIDGRK

Query:  SKKEG------DKRDSLASNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLMRDLNDHTARVTVARSSVRFTSSKMLNIGFTKQSGNCIIGGIKKVKD
        SKKEG      DKRDSLASNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLMRDLNDHTARVTVARSSVRFTSSKMLNIGFTKQSGNCIIGGIKKVKD
Subjt:  SKKEG------DKRDSLASNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLMRDLNDHTARVTVARSSVRFTSSKMLNIGFTKQSGNCIIGGIKKVKD

Query:  EIKFTITFRPVPFFDSFSTKR
        EIKFTITFRPVPFFDSFSTKR
Subjt:  EIKFTITFRPVPFFDSFSTKR

A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein1.1e-2248.65Show/hide
Query:  FDSFSTKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLE
        +DS +T  +  L K  P      +    C+R++EDR HLFI CP A SIW LI    N N+    P +LC  +C W QKTKKN+IL +T A A+WNIWLE
Subjt:  FDSFSTKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLE

Query:  QNHRIFNDKNK
        +N RIFN K K
Subjt:  QNHRIFNDKNK

A0A5D3BU35 LINE-1 retrotransposable element ORF2 protein7.4e-2458.82Show/hide
Query:  CRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLEQNHRIFNDKNKAS
        C+R+EEDR HLFI CPFA SIW  I    + N+    P ELC  +C WNQKTKKN+IL +T A A+WNIWLE+N RIFN K K +
Subjt:  CRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLEQNHRIFNDKNKAS

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.4e-2248.65Show/hide
Query:  FDSFSTKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLE
        +DS +T  +  L K  P      +    C+R++EDR HLFI CP A SIW  I    N N+    P ELC  +C W QKTKKN+IL +T A A+WNIWLE
Subjt:  FDSFSTKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLE

Query:  QNHRIFNDKNK
        +N RIFN K K
Subjt:  QNHRIFNDKNK

A0A5D3CJ08 LINE-1 retrotransposable element ORF2 protein1.3e-2352.83Show/hide
Query:  TKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLEQNHRI
        TKR  +L      CV        C+R+EEDR HLFI CP A SIWNLI      N+    P +LC  +C W QKTKKNIIL +T A A+WNIWLE+N RI
Subjt:  TKRRTSLSKDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLEQNHRI

Query:  FNDKNK
        FN K K
Subjt:  FNDKNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G33710.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.7e-0428.05Show/hide
Query:  CRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWN-QKTKKNIILLS--TIACAIWNIWLEQNHRIFN
        C  D EDR HLF+TC FA  +W+ +  +    LP +    +   + DW  Q+ +++   L    +   ++ IW ++N+ + N
Subjt:  CRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWN-QKTKKNIILLS--TIACAIWNIWLEQNHRIFN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTACTTCAAGTGCCCATATCTTCCAATTGAACAAGCTTTATTCACCCTAAGCAGAATCAACGAAAATGGGTATTTCAAAAGCCATCCAAATCTGTTAATTTTCTC
TACAAGTTACGCAGATTTCCCACTCACCTTAGTAACCCTACAACTGATGCCTCAATTCTTCATGGAATACAATTGCGATTCCCTTTATCACTACAACATCCATATCGATC
ATCTTTACAGACTCTTTAAAACTGCAAGAACCAAGATGTTATTTCAAACCTTTGACTTCAATCTCATTGATGGTCGCAAATCAAAGAAAGAAGGTGATAAGAGAGATTCA
TTAGCATCAAATGTACGTACATTGGATAAACTTCCTCTTGATACACAAAAGATTCCCTCAATTCAATATGATGCATTTTTCACTATGGAAACAGAACTATTCAAAACCCT
AATGCGTGATTTAAATGATCATACAGCTAGGGTTACTGTGGCACGTTCATCTGTGAGATTCACTTCCAGTAAAATGTTGAATATTGGATTTACTAAACAGTCAGGGAATT
GTATAATCGGAGGCATTAAGAAAGTGAAAGATGAAATTAAGTTTACAATCACTTTCAGGCCGGTTCCGTTCTTCGATAGCTTCTCAACGAAAAGGCGGACCAGCTTGTCA
AAAGACTCCCCAATCTGTGTTCGAGACCTAACTGGTGTATTCTTTTGTAGACGTGATGAAGAAGATAGAAGCCATCTTTTTATTACTTGCCCATTTGCTGTTTCCATATG
GAATCTTATTGGTCCTCAGTTCAACAGAAACCTCCCCTTCTACGGTCCTAGCGAGCTTTGTAAACATATTTGCGACTGGAACCAAAAAACCAAAAAGAACATCATCCTTC
TCAGCACTATTGCTTGTGCCATTTGGAATATTTGGCTGGAACAGAATCATAGAATTTTTAACGACAAAAATAAAGCCTCCAAAGGATACTTGGGAAAATATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTACTTCAAGTGCCCATATCTTCCAATTGAACAAGCTTTATTCACCCTAAGCAGAATCAACGAAAATGGGTATTTCAAAAGCCATCCAAATCTGTTAATTTTCTC
TACAAGTTACGCAGATTTCCCACTCACCTTAGTAACCCTACAACTGATGCCTCAATTCTTCATGGAATACAATTGCGATTCCCTTTATCACTACAACATCCATATCGATC
ATCTTTACAGACTCTTTAAAACTGCAAGAACCAAGATGTTATTTCAAACCTTTGACTTCAATCTCATTGATGGTCGCAAATCAAAGAAAGAAGGTGATAAGAGAGATTCA
TTAGCATCAAATGTACGTACATTGGATAAACTTCCTCTTGATACACAAAAGATTCCCTCAATTCAATATGATGCATTTTTCACTATGGAAACAGAACTATTCAAAACCCT
AATGCGTGATTTAAATGATCATACAGCTAGGGTTACTGTGGCACGTTCATCTGTGAGATTCACTTCCAGTAAAATGTTGAATATTGGATTTACTAAACAGTCAGGGAATT
GTATAATCGGAGGCATTAAGAAAGTGAAAGATGAAATTAAGTTTACAATCACTTTCAGGCCGGTTCCGTTCTTCGATAGCTTCTCAACGAAAAGGCGGACCAGCTTGTCA
AAAGACTCCCCAATCTGTGTTCGAGACCTAACTGGTGTATTCTTTTGTAGACGTGATGAAGAAGATAGAAGCCATCTTTTTATTACTTGCCCATTTGCTGTTTCCATATG
GAATCTTATTGGTCCTCAGTTCAACAGAAACCTCCCCTTCTACGGTCCTAGCGAGCTTTGTAAACATATTTGCGACTGGAACCAAAAAACCAAAAAGAACATCATCCTTC
TCAGCACTATTGCTTGTGCCATTTGGAATATTTGGCTGGAACAGAATCATAGAATTTTTAACGACAAAAATAAAGCCTCCAAAGGATACTTGGGAAAATATTAA
Protein sequenceShow/hide protein sequence
MLYFKCPYLPIEQALFTLSRINENGYFKSHPNLLIFSTSYADFPLTLVTLQLMPQFFMEYNCDSLYHYNIHIDHLYRLFKTARTKMLFQTFDFNLIDGRKSKKEGDKRDS
LASNVRTLDKLPLDTQKIPSIQYDAFFTMETELFKTLMRDLNDHTARVTVARSSVRFTSSKMLNIGFTKQSGNCIIGGIKKVKDEIKFTITFRPVPFFDSFSTKRRTSLS
KDSPICVRDLTGVFFCRRDEEDRSHLFITCPFAVSIWNLIGPQFNRNLPFYGPSELCKHICDWNQKTKKNIILLSTIACAIWNIWLEQNHRIFNDKNKASKGYLGKY