; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C035238 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035238
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionrRNA-processing protein fcf2
Genome locationchr11:30368114..30372139
RNA-Seq ExpressionMELO3C035238
SyntenyMELO3C035238
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0005730 - nucleolus (cellular component)
InterPro domainsIPR014810 - Fcf2 pre-rRNA processing, C-terminal
IPR039883 - Fcf2/DNTTIP2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592956.1 hypothetical protein SDJN03_12432, partial [Cucurbita argyrosperma subsp. sororia]1.8e-5974.1Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MS +KP+I LSWEPKLP SSSGIKTK CDKS++QAENG+VWK+NSELVDGLFVPPNNPKKLNKLLRKQVSDTAGR+WFDMPA+TMTPE+EKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

XP_008459856.1 PREDICTED: rRNA-processing protein fcf2 [Cucumis melo]1.3e-6581.93Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

XP_011656806.1 rRNA-processing protein fcf2 [Cucumis sativus]6.1e-6378.92Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MS+ KPIIGLSWEPKLPASSSGIK KTCDKSN+QAENG+VWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

XP_023005116.1 rRNA-processing protein fcf2-like [Cucurbita maxima]1.8e-5974.1Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MS +KP+I LSWEPKLP SSSGIKTK CDKS++QAENG+VWK+NSELVDGLFVPPNNPKKLNKLLRKQVSDTAGR+WFDMPA+TMTPE+EKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

XP_038876081.1 rRNA-processing protein fcf2 [Benincasa hispida]5.2e-6277.11Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MSE+KPIIGLSWEPKLPASSSGI+TK CDKSN QAENG+VWK+NSELVDGLFVPPNNPKKLNKLLRKQV DTAGRNWFDMPA+TMTPEVEKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

TrEMBL top hitse value%identityAlignment
A0A0A0K9M7 Fcf2 domain-containing protein3.0e-6378.92Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MS+ KPIIGLSWEPKLPASSSGIK KTCDKSN+QAENG+VWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

A0A1S3CB58 rRNA-processing protein fcf26.4e-6681.93Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

A0A6J1DMD6 rRNA-processing protein fcf22.9e-5872.89Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MSE+KP+IGLSWEPKL  SSSGIKTKTCDKS+ Q E+ +VWK+N+ELVDGLFVPPNNPKKLNKLLRKQVSDTAGR+WFDMPA+TMTPE+EKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

A0A6J1H9T2 rRNA-processing protein fcf2-like1.5e-5974.1Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MS +KP+I LSWEPKLP SSSGIKTK CDKS++QA NG+VWK+NSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPA+TMTPE+EKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

A0A6J1KU17 rRNA-processing protein fcf2-like8.9e-6074.1Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---
        MS +KP+I LSWEPKLP SSSGIKTK CDKS++QAENG+VWK+NSELVDGLFVPPNNPKKLNKLLRKQVSDTAGR+WFDMPA+TMTPE+EKDLRLLK   
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK---

Query:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                               VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYR  ++
Subjt:  -----------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

SwissProt top hitse value%identityAlignment
O42877 rRNA-processing protein fcf25.6e-1138.3Show/hide
Query:  RKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK------------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQY
        +K + DTAG NWFDMPA  +T  V++D++LLK                        VG++VE   DF+S R+  +ERK T+ DELL D     Y
Subjt:  RKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK------------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQY

Q0P5H2 Deoxynucleotidyltransferase terminal-interacting protein 21.2e-0833.03Show/hide
Query:  VPP--NNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK------------------------VGTVVESSLDFFSGRLTKKERKATLADEL
        VPP   +  KL K  R++   TAG  WF M A  +T E++ DL+ LK                        +GT+V++  DF+  R+ KK+RK T+ +EL
Subjt:  VPP--NNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK------------------------VGTVVESSLDFFSGRLTKKERKATLADEL

Query:  LSDQALTQY
        L+D    +Y
Subjt:  LSDQALTQY

Q5QJE6 Deoxynucleotidyltransferase terminal-interacting protein 21.8e-0934.86Show/hide
Query:  VPPNNPKK--LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK------------------------VGTVVESSLDFFSGRLTKKERKATLADEL
        VPP +  K  L K  RK+   TAG  WF M A  MT E++ DL+ LK                        +GT+V++  DF+  R+ KK+RK T+ +EL
Subjt:  VPPNNPKK--LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK------------------------VGTVVESSLDFFSGRLTKKERKATLADEL

Query:  LSDQALTQY
        L+D    +Y
Subjt:  LSDQALTQY

Q8R2M2 Deoxynucleotidyltransferase terminal-interacting protein 21.8e-0934.86Show/hide
Query:  VPPNNPKK--LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK------------------------VGTVVESSLDFFSGRLTKKERKATLADEL
        VPP +  K  L K  RK+   TAG  WF M A  +T E++ DLR LK                        VGT+V++  DF+  R+ KK+RK T+ +EL
Subjt:  VPPNNPKK--LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK------------------------VGTVVESSLDFFSGRLTKKERKATLADEL

Query:  LSDQALTQY
        L+D    ++
Subjt:  LSDQALTQY

Arabidopsis top hitse value%identityAlignment
AT1G54770.1 Fcf2 pre-rRNA processing protein3.1e-3345.68Show/hide
Query:  RKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKVGTVVE
        ++P+IGL WEPKLP  S  +KT +      ++       S SELVDGL +PPN+P+K+NK++RKQ+ DT G NWFDMPA TMTPE+++DL+LLK+ TV++
Subjt:  RKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKVGTVVE

Query:  SSLDF-------------------------FSGRLTKKERKATLADELLSDQALTQYRVERL
         +L +                         F GRLTKK RKATLADEL+SD     YR  ++
Subjt:  SSLDF-------------------------FSGRLTKKERKATLADELLSDQALTQYRVERL

AT5G30495.1 Fcf2 pre-rRNA processing protein4.5e-4050.3Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQA---ENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK
        M+E KP+IGL+WEPKLP  S  + TKTC  S+ +    E+  +W S SELVDGL +PPN+PKK+NK++RKQ+ DT G NWFDMPA TMTPE+++DL+LLK
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQA---ENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK

Query:  --------------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                                  +GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYR  ++
Subjt:  --------------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL

AT5G30495.2 Fcf2 pre-rRNA processing protein4.5e-4050.3Show/hide
Query:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQA---ENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK
        M+E KP+IGL+WEPKLP  S  + TKTC  S+ +    E+  +W S SELVDGL +PPN+PKK+NK++RKQ+ DT G NWFDMPA TMTPE+++DL+LLK
Subjt:  MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQA---ENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLK

Query:  --------------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL
                                  +GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYR  ++
Subjt:  --------------------------VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRVERL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGAAAGAAAGCCCATAATTGGTCTCTCTTGGGAGCCAAAGCTGCCAGCCTCCTCATCGGGAATCAAAACTAAAACCTGCGACAAATCTAATAATCAAGCAGAAAA
CGGTATTGTTTGGAAAAGCAATTCAGAGCTTGTAGATGGGTTATTTGTTCCACCAAACAACCCAAAAAAGTTGAATAAGTTATTGAGAAAGCAAGTCAGTGACACGGCTG
GGAGGAATTGGTTTGACATGCCAGCAAAAACCATGACCCCTGAAGTGGAAAAAGATTTGCGCCTGTTGAAGGTGGGAACTGTGGTTGAGTCTTCTTTGGACTTCTTCTCG
GGTAGATTAACAAAGAAAGAAAGGAAAGCAACGCTTGCAGATGAGCTGCTATCCGATCAGGCTCTCACTCAGTACAGAGTTGAAAGGTTGAATGGTAACTATCTTTTAGA
ATCAGATGGTTTGATTGGTGACGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATACTCCCAAACTTTGAATTATTAACATTAAACCTTCACACTTACACCAAACTATATGAGTGCGTAAGTTTGCATCGATTTAATCAAATTTTAATATTAATGTAAGTTGA
GGGTCAATTTTTGCGATTAGTAAAAAAGAAAAAAATTGACCTCTAAGAAACCCTCGTGAACCCAGGCAGCCCTCTCGCGCCAACCCTCATTCACTCGCCGTCTCCTCCTC
AATCTTCTTCAATCTCCCGATCTTGCACTACGCAAGACAGCTTAATCCCTAGGTTTCGTGGGTCTGCCGTGTGTTCATTGTCGACGTCGTGGAATTTTTTTAAAATACTT
TGATGTCGGAAAGAAAGCCCATAATTGGTCTCTCTTGGGAGCCAAAGCTGCCAGCCTCCTCATCGGGAATCAAAACTAAAACCTGCGACAAATCTAATAATCAAGCAGAA
AACGGTATTGTTTGGAAAAGCAATTCAGAGCTTGTAGATGGGTTATTTGTTCCACCAAACAACCCAAAAAAGTTGAATAAGTTATTGAGAAAGCAAGTCAGTGACACGGC
TGGGAGGAATTGGTTTGACATGCCAGCAAAAACCATGACCCCTGAAGTGGAAAAAGATTTGCGCCTGTTGAAGGTGGGAACTGTGGTTGAGTCTTCTTTGGACTTCTTCT
CGGGTAGATTAACAAAGAAAGAAAGGAAAGCAACGCTTGCAGATGAGCTGCTATCCGATCAGGCTCTCACTCAGTACAGAGTTGAAAGGTTGAATGGTAACTATCTTTTA
GAATCAGATGGTTTGATTGGTGACGATTCTTGA
Protein sequenceShow/hide protein sequence
MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKVGTVVESSLDFFS
GRLTKKERKATLADELLSDQALTQYRVERLNGNYLLESDGLIGDDS