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MELO3C035382 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035382
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description40S ribosomal protein S20-2
Genome locationchr12:3050079..3053388
RNA-Seq ExpressionMELO3C035382
SyntenyMELO3C035382
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK11796.1 40S ribosomal protein S20-2-like isoform X2 [Cucumis melo var. makuwa]2.9e-1466.23Show/hide
Query:  VMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEKENHKHQIICGKLMVQVQPSVNFLELKAKHHYAKLRDRVDSQAIE
        VMKPI+P LEDAQEQIHEIRITLSSKNVKNLEK   K        +    P      L AKHHYAKLRDRV SQAIE
Subjt:  VMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEKENHKHQIICGKLMVQVQPSVNFLELKAKHHYAKLRDRVDSQAIE

XP_004143650.1 40S ribosomal protein S20-2 [Cucumis sativus]3.4e-0783.78Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +A MKP +PGLEDAQEQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

XP_008439109.1 PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]1.0e-0681.08Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +A MKP +PGLED QEQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

XP_008457583.1 PREDICTED: uncharacterized protein LOC103497249 [Cucumis melo]3.3e-10100Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

XP_008467267.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo]3.4e-0783.78Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +A MKP +PGLEDAQEQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

TrEMBL top hitse value%identityAlignment
A0A0A0KL82 Ribosomal_S10 domain-containing protein1.7e-0783.78Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +A MKP +PGLEDAQEQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

A0A1S3C5T7 uncharacterized protein LOC1034972491.6e-10100Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

A0A1S4E624 40S ribosomal protein S20-21.7e-0783.78Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +A MKP +PGLEDAQEQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

A0A5D3CMZ2 40S ribosomal protein S20-2-like isoform X21.4e-1466.23Show/hide
Query:  VMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEKENHKHQIICGKLMVQVQPSVNFLELKAKHHYAKLRDRVDSQAIE
        VMKPI+P LEDAQEQIHEIRITLSSKNVKNLEK   K        +    P      L AKHHYAKLRDRV SQAIE
Subjt:  VMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEKENHKHQIICGKLMVQVQPSVNFLELKAKHHYAKLRDRVDSQAIE

A0A5D3DB09 40S ribosomal protein S20-21.7e-0783.78Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +A MKP +PGLEDAQEQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

SwissProt top hitse value%identityAlignment
P49200 40S ribosomal protein S20-11.1e-0578.12Show/hide
Query:  MKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        MKP + GLE+  EQIH+IRITLSSKNVKNLEK
Subjt:  MKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

Q9STY6 40S ribosomal protein S20-25.2e-0670.27Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +  MKP + GLE   EQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

Arabidopsis top hitse value%identityAlignment
AT3G45030.1 Ribosomal protein S10p/S20e family protein8.2e-0778.12Show/hide
Query:  MKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        MKP + GLE+  EQIH+IRITLSSKNVKNLEK
Subjt:  MKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

AT3G47370.1 Ribosomal protein S10p/S20e family protein3.7e-0770.27Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +  MKP + GLE   EQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

AT3G47370.2 Ribosomal protein S10p/S20e family protein3.7e-0770.27Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +  MKP + GLE   EQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

AT3G47370.3 Ribosomal protein S10p/S20e family protein3.7e-0770.27Show/hide
Query:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        M +  MKP + GLE   EQIH+IRITLSSKNVKNLEK
Subjt:  MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK

AT5G62300.1 Ribosomal protein S10p/S20e family protein8.2e-0778.12Show/hide
Query:  MKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK
        MKP + GLE+  EQIH+IRITLSSKNVKNLEK
Subjt:  MKPIRPGLEDAQEQIHEIRITLSSKNVKNLEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCATGCAGTAATGAAGCCTATAAGGCCTGGTTTGGAGGACGCACAAGAGCAAATCCACGAGATTAGGATCACTCTTTCCTCCAAAAATGTGAAGAACCTT
GAAAAAGAAAATCACAAGCACCAAATAATATGTGGGAAATTGATGGTTCAAGTTCAACCTTCAGTCAACTTCTTGGAATTGAAGGCTAAACACCATTATGCAAAG
CTAAGGGATCGTGTAGATAGTCAAGCGATCGAGTCTGCACTAGACTTGGGGTGGCCGATGGCATGGGTTGTTGGATTTGTGGTTGAAATGATTGAAGTCATCAGA
TTGAAAGCTAAGCGATTGTGTACATAG
mRNA sequenceShow/hide mRNA sequence
TTTAGGTAGTAAGTAAGCAAACATGGTGCATGCAGTAATGAAGCCTATAAGGCCTGGTTTGGAGGACGCACAAGAGCAAATCCACGAGATTAGGATCACTCTTTC
CTCCAAAAATGTGAAGAACCTTGAAAAAGAAAATCACAAGCACCAAATAATATGTGGGAAATTGATGGTTCAAGTTCAACCTTCAGTCAACTTCTTGGAATTGAA
GGCTAAACACCATTATGCAAAGCTAAGGGATCGTGTAGATAGTCAAGCGATCGAGTCTGCACTAGACTTGGGGTGGCCGATGGCATGGGTTGTTGGATTTGTGGT
TGAAATGATTGAAGTCATCAGATTGAAAGCTAAGCGATTGTGTACATAG
Protein sequenceShow/hide protein sequence
MVHAVMKPIRPGLEDAQEQIHEIRITLSSKNVKNLEKENHKHQIICGKLMVQVQPSVNFLELKAKHHYAKLRDRVDSQAIESALDLGWPMAWVVGFVVEMIEVIR
LKAKRLCT