CuGenDBv2

Gene ID	MELO3C035404
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Lipoyl synthase, chloroplastic
Genome location	chr12:10098364..10098811
RNA-Seq Expression	MELO3C035404
Synteny	MELO3C035404
Gene Ontology terms	GO:0009107 - lipoate biosynthetic process (biological process) GO:0009249 - protein lipoylation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0016992 - lipoate synthase activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function) GO:0102552 - lipoyl synthase activity (acting on glycine-cleavage complex H protein (molecular function) GO:0102553 - lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein) (molecular function)
InterPro domains	IPR003698 - Lipoyl synthase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008445908.1 PREDICTED: lipoyl synthase, chloroplastic [Cucumis melo]

4.7e-30

93.15

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Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGLDVFAHNIETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

XP_022945153.1 lipoyl synthase, chloroplastic [Cucurbita moschata]

6.2e-30

91.78

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Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGLDVFAHN+ETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

XP_038893417.1 lipoyl synthase, chloroplastic-like [Benincasa hispida]

4.7e-30

93.15

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Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGLDVFAHNIETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

XP_041015877.1 lipoyl synthase, chloroplastic-like isoform X1 [Juglans microcarpa x Juglans regia]

6.2e-30

91.78

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Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDD+ +GGSGHFAQTVKAMK+LKPEIMVECLT DFRGNLKAVETLVHSGLDVFAHNIETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

XP_041015878.1 lipoyl synthase 1, chloroplastic-like isoform X2 [Juglans microcarpa x Juglans regia]

6.2e-30

91.78

Show/hide

Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDD+ +GGSGHFAQTVKAMK+LKPEIMVECLT DFRGNLKAVETLVHSGLDVFAHNIETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPN0 Lipoyl synthase, chloroplastic

3.0e-30

91.78

Show/hide

Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGLDVFAHN+ETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

A0A1S3BDA7 Lipoyl synthase, chloroplastic

2.3e-30

93.15

Show/hide

Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGLDVFAHNIETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

A0A5D3CZE8 Lipoyl synthase, chloroplastic

2.3e-30

93.15

Show/hide

Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGLDVFAHNIETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

A0A6J1G009 Lipoyl synthase, chloroplastic

3.0e-30

91.78

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Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGLDVFAHN+ETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

A0A6J1HVC4 Lipoyl synthase, chloroplastic

3.0e-30

91.78

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Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDDI +GGSGHFAQTVKAMKELKPEIMVECLT DFRG+LKAVETLVHSGLDVFAHN+ETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

SwissProt top hits

e value

%identity

Alignment

B8B016 Lipoyl synthase 2, chloroplastic

5.1e-27

76.71

Show/hide

Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDY++LTSVDRDD+ +GGSGHFAQTVKA+KELKP I+VECLT DFRG+L+AV +L  SGLDVFAHNIETV+ L
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

B9I666 Lipoyl synthase 1, chloroplastic

1.2e-31

86.3

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Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI++TSVDRDD+ +GGSGHFAQTV+AMKELKPEIMVECLT DFRG+LKAV+TLVHSGLDVFAHN+ETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

B9N2B0 Lipoyl synthase 2, chloroplastic

9.0e-32

86.3

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Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI++TSVDRDD+ +GGSGHFAQTV+AMKELKPEIMVECLT DFRG+LKAV+TLVHSGLDVFAHN+ETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

B9RX57 Lipoyl synthase, chloroplastic

1.3e-30

84.93

Show/hide

Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI+LTSVDRDD+ +GGSGHF++TV+AMK+LKPEIMVECLT DFRG+L+AVETLVHSGLDVFAHNIETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

Q8LEE8 Lipoyl synthase, chloroplastic

6.4e-30

82.19

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Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI++TSVDRDDI +GGSGHFAQTVKAMK  KP+IM+ECLT DFRG+L+AV+TLVHSGLDVFAHN+ETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

Arabidopsis top hits

e value

%identity

Alignment

AT2G20860.1 lipoic acid synthase 1

1.6e-20

60.27

Show/hide

Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDY+++TSVDRDD+ + GSGHFA+TV+ +K LKPE+++E L  DFRG+   VE +  SGLDV AHNIETV+ L
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

AT5G08415.1 Radical SAM superfamily protein

4.6e-31

82.19

Show/hide

Query:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL
        VDYI++TSVDRDDI +GGSGHFAQTVKAMK  KP+IM+ECLT DFRG+L+AV+TLVHSGLDVFAHN+ETVKRL
Subjt:  VDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

Sequences

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CDS sequence

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GTTCTCATCTACTTGTTTTATCGATGCATTGTGGATTACATCATCTTAACAAGTGTAGACCGTGATGATATTCATAATGGAGGAAGTGGGCATTTTGCTCAAACAGTTAA
AGCAATGAAGGAACTTAAGCCTGAGATAATGGTTGAATGCTTAACTTTTGATTTCCGAGGTAACTTAAAGGCTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATTTG
CTCACAATATTGAGACTGTGAAACGACTTTAA

mRNA sequence

Show/hide mRNA sequence

ATGTTCTCATCTACTTGTTTTATCGATGCATTGTGGATTACATCATCTTAACAAGTGTAGACCGTGATGATATTCATAATGGAGGAAGTGGGCATTTTGCTCAAACAGTT
AAAGCAATGAAGGAACTTAAGCCTGAGATAATGGTTGAATGCTTAACTTTTGATTTCCGAGGTAACTTAAAGGCTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATT
TGCTCACAATATTGAGACTGTGAAACGACTTTAAAGAATTGTTAGAGATCCTTGAGCTGGGTAA

Protein sequence

Show/hide protein sequence

VLIYLFYRCIVDYIILTSVDRDDIHNGGSGHFAQTVKAMKELKPEIMVECLTFDFRGNLKAVETLVHSGLDVFAHNIETVKRL

MELO3C035404 (gene) of Melon (DHL92) v4 genome