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MELO3C035409 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035409
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionZinc finger, CCHC-type
Genome locationchr12:10582652..10583074
RNA-Seq ExpressionMELO3C035409
SyntenyMELO3C035409
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036753.1 hypothetical protein E6C27_scaffold20G00320 [Cucumis melo var. makuwa]4.8e-1160.26Show/hide
Query:  SNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL-----------QARFSVFNKELELQESLG
        ++EEENETHAGNSWE+IQSQTNQEAII+TQGSM KARAKR QD LN  +            A F  F  EL L+ S G
Subjt:  SNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL-----------QARFSVFNKELELQESLG

KAA0065903.1 reverse transcriptase [Cucumis melo var. makuwa]3.0e-2986.42Show/hide
Query:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII
        MLN+EAYTNSN+EENETHA NSW +IQ QTNQE II+TQGSM KARAKRF+DELNACLQARFSVFNKELELQESLGHPR+I
Subjt:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII

TYK14528.1 integrase [Cucumis melo var. makuwa]8.5e-0871.15Show/hide
Query:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQD
        MLN+EA+TNSNE+ENE H GNSWE+ Q QTNQEA I+ Q SM KARAK  QD
Subjt:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQD

TYK15114.1 Zinc finger, CCHC-type [Cucumis melo var. makuwa]3.0e-2986.42Show/hide
Query:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII
        MLN+EAYTNSN+EENETHA NSW +IQ QTNQE II+TQGSM KARAKRF+DELNACLQARFSVFNKELELQESLGHPR+I
Subjt:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII

TYK19543.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]2.4e-1889.66Show/hide
Query:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL
        MLNSEA+TNSNEEENETHAGNSWE+IQSQTNQEAII+TQGSM KARAKR QD LNACL
Subjt:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL

TrEMBL top hitse value%identityAlignment
A0A5A7VCL9 Reverse transcriptase1.4e-2986.42Show/hide
Query:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII
        MLN+EAYTNSN+EENETHA NSW +IQ QTNQE II+TQGSM KARAKRF+DELNACLQARFSVFNKELELQESLGHPR+I
Subjt:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII

A0A5D3B744 Integrase catalytic domain-containing protein2.3e-1160.26Show/hide
Query:  SNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL-----------QARFSVFNKELELQESLG
        ++EEENETHAGNSWE+IQSQTNQEAII+TQGSM KARAKR QD LN  +            A F  F  EL L+ S G
Subjt:  SNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL-----------QARFSVFNKELELQESLG

A0A5D3CTJ1 Integrase4.1e-0871.15Show/hide
Query:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQD
        MLN+EA+TNSNE+ENE H GNSWE+ Q QTNQEA I+ Q SM KARAK  QD
Subjt:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQD

A0A5D3CW05 Zinc finger, CCHC-type1.4e-2986.42Show/hide
Query:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII
        MLN+EAYTNSN+EENETHA NSW +IQ QTNQE II+TQGSM KARAKRF+DELNACLQARFSVFNKELELQESLGHPR+I
Subjt:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII

A0A5D3D7R5 Transposon Ty3-G Gag-Pol polyprotein1.2e-1889.66Show/hide
Query:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL
        MLNSEA+TNSNEEENETHAGNSWE+IQSQTNQEAII+TQGSM KARAKR QD LNACL
Subjt:  MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAACAGTGAAGCTTACACCAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAGCATTCAAAGTCAAACCAATCAAGAGGCAATCATTAT
AACTCAAGGCTCAATGATAAAAGCTAGAGCTAAAAGATTTCAAGATGAATTAAATGCTTGTTTACAAGCTAGATTTTCAGTATTCAATAAAGAGTTGGAACTTCAAGAGT
CACTTGGACACCCAAGGATCATA
mRNA sequenceShow/hide mRNA sequence
TAGAATATATTTATGCTATTACGTAATTATTGTGTAGGATGGAATGATAACATTAAAAAGCACTTCATCACAAGAAGGGAGTGAACCTCTTCTAGAAGGGGAAAGAACAA
GGTTGGGGACCAAGACCTAAGAATGCTAGAAATGAAGCAATTCAACAAAGCACAAAAGAAACTGATAAGATGTTGAACAGTGAAGCTTACACCAACTCAAATGAAGAGGA
AAATGAAACACATGCTGGAAATTCATGGGAGAGCATTCAAAGTCAAACCAATCAAGAGGCAATCATTATAACTCAAGGCTCAATGATAAAAGCTAGAGCTAAAAGATTTC
AAGATGAATTAAATGCTTGTTTACAAGCTAGATTTTCAGTATTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGATCATAA
Protein sequenceShow/hide protein sequence
MLNSEAYTNSNEEENETHAGNSWESIQSQTNQEAIIITQGSMIKARAKRFQDELNACLQARFSVFNKELELQESLGHPRII