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MELO3C035450 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035450
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:4942336..4945016
RNA-Seq ExpressionMELO3C035450
SyntenyMELO3C035450
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]5.4e-1033.52Show/hide
Query:  KLSLESPFFKKYRFVDSSVYGIVEINILVHDRLYPSMLKTPR----SITSTWLKLYIK---------------------FKSSVESTGVVRGER-CRLHA
        +LSL++    K      S   ++  N +V +   P +L T      S +STWL+LY +                     F  SV STG+VRG+  C LHA
Subjt:  KLSLESPFFKKYRFVDSSVYGIVEINILVHDRLYPSMLKTPR----SITSTWLKLYIK---------------------FKSSVESTGVVRGER-CRLHA

Query:  VFRSKLA---------------------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
        VFR+K                                    R ER+GP+ P+KMY +ERLKKL ATVFEGS + ADA+V
Subjt:  VFRSKLA---------------------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-0734.59Show/hide
Query:  IVEINILVHDRLYPSMLKTPRSITSTWLKLYIKFKSSVES---TGVVR-GERCRLHAVFRSKLA------------------------------------
        +VEI + V D L P+  ++  S +STWL+LY++F   VE     G+VR  + C LHAVFR+K A                                    
Subjt:  IVEINILVHDRLYPSMLKTPRSITSTWLKLYIKFKSSVES---TGVVR-GERCRLHAVFRSKLA------------------------------------

Query:  --------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
                             R ER  P++PEKMY +ERLKKL ATVFEGS + AD KV
Subjt:  --------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]1.9e-0733.54Show/hide
Query:  IVEINILVHDRLYPSMLKTPRSITSTWLK-----LYIKFKSSVESTGVVRGER-CRLHAVFRSKLA----------------------------------
        +VEI + V D L P+  ++  S +S +       L++ F  SVESTG+VRG+  C LHAVFR+K                                    
Subjt:  IVEINILVHDRLYPSMLKTPRSITSTWLK-----LYIKFKSSVESTGVVRGER-CRLHAVFRSKLA----------------------------------

Query:  ----------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
                               R ER+GP++PEKMY +ERLKKL ATVFEGS + A+A+V
Subjt:  ----------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.2e-0933.52Show/hide
Query:  KLSLESPFFKKYRFVDSSVYGIVEINILVHDRLYPSMLKTPR----SITSTWLKLYIK---------------------FKSSVESTGVVRGER-CRLHA
        +LSL++    K      S   ++  N  V +   P  L T      S +STWL+LY +                     F  SV STG+VRG+  C LHA
Subjt:  KLSLESPFFKKYRFVDSSVYGIVEINILVHDRLYPSMLKTPR----SITSTWLKLYIK---------------------FKSSVESTGVVRGER-CRLHA

Query:  VFRSKLA---------------------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
        VFR+K                                    R ER+GP++P+KMY +ERLKKL ATVFEGS + ADA+V
Subjt:  VFRSKLA---------------------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-0734.59Show/hide
Query:  IVEINILVHDRLYPSMLKTPRSITSTWLKLYIKFKSSVES---TGVVR-GERCRLHAVFRSKLA------------------------------------
        +VEI + V D L P+  ++  S +STWL+LY++F   VE     G+VR  + C LHAVFR+K A                                    
Subjt:  IVEINILVHDRLYPSMLKTPRSITSTWLKLYIKFKSSVES---TGVVR-GERCRLHAVFRSKLA------------------------------------

Query:  --------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
                             R ER  P++PEKMY +ERLKKL ATVFEGS + AD KV
Subjt:  --------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein2.6e-1033.52Show/hide
Query:  KLSLESPFFKKYRFVDSSVYGIVEINILVHDRLYPSMLKTPR----SITSTWLKLYIK---------------------FKSSVESTGVVRGER-CRLHA
        +LSL++    K      S   ++  N +V +   P +L T      S +STWL+LY +                     F  SV STG+VRG+  C LHA
Subjt:  KLSLESPFFKKYRFVDSSVYGIVEINILVHDRLYPSMLKTPR----SITSTWLKLYIK---------------------FKSSVESTGVVRGER-CRLHA

Query:  VFRSKLA---------------------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
        VFR+K                                    R ER+GP+ P+KMY +ERLKKL ATVFEGS + ADA+V
Subjt:  VFRSKLA---------------------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

A0A5A7VMG9 Reverse transcriptase2.1e-0734.59Show/hide
Query:  IVEINILVHDRLYPSMLKTPRSITSTWLKLYIKFKSSVES---TGVVR-GERCRLHAVFRSKLA------------------------------------
        +VEI + V D L P+  ++  S +STWL+LY++F   VE     G+VR  + C LHAVFR+K A                                    
Subjt:  IVEINILVHDRLYPSMLKTPRSITSTWLKLYIKFKSSVES---TGVVR-GERCRLHAVFRSKLA------------------------------------

Query:  --------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
                             R ER  P++PEKMY +ERLKKL ATVFEGS + AD KV
Subjt:  --------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

A0A5D3BMJ4 Retrotrans_gag domain-containing protein9.3e-0833.54Show/hide
Query:  IVEINILVHDRLYPSMLKTPRSITSTWLK-----LYIKFKSSVESTGVVRGER-CRLHAVFRSKLA----------------------------------
        +VEI + V D L P+  ++  S +S +       L++ F  SVESTG+VRG+  C LHAVFR+K                                    
Subjt:  IVEINILVHDRLYPSMLKTPRSITSTWLK-----LYIKFKSSVESTGVVRGER-CRLHAVFRSKLA----------------------------------

Query:  ----------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
                               R ER+GP++PEKMY +ERLKKL ATVFEGS + A+A+V
Subjt:  ----------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

A0A5D3CJX3 CCHC-type domain-containing protein5.8e-1033.52Show/hide
Query:  KLSLESPFFKKYRFVDSSVYGIVEINILVHDRLYPSMLKTPR----SITSTWLKLYIK---------------------FKSSVESTGVVRGER-CRLHA
        +LSL++    K      S   ++  N  V +   P  L T      S +STWL+LY +                     F  SV STG+VRG+  C LHA
Subjt:  KLSLESPFFKKYRFVDSSVYGIVEINILVHDRLYPSMLKTPR----SITSTWLKLYIK---------------------FKSSVESTGVVRGER-CRLHA

Query:  VFRSKLA---------------------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
        VFR+K                                    R ER+GP++P+KMY +ERLKKL ATVFEGS + ADA+V
Subjt:  VFRSKLA---------------------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

A0A5D3DX39 Reverse transcriptase2.1e-0734.59Show/hide
Query:  IVEINILVHDRLYPSMLKTPRSITSTWLKLYIKFKSSVES---TGVVR-GERCRLHAVFRSKLA------------------------------------
        +VEI + V D L P+  ++  S +STWL+LY++F   VE     G+VR  + C LHAVFR+K A                                    
Subjt:  IVEINILVHDRLYPSMLKTPRSITSTWLKLYIKFKSSVES---TGVVR-GERCRLHAVFRSKLA------------------------------------

Query:  --------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV
                             R ER  P++PEKMY +ERLKKL ATVFEGS + AD KV
Subjt:  --------------------DRSERIGPNEPEKMYRVERLKKLEATVFEGSLNLADAKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGACGGTTTCAAAAAGTGGATCTACTTGGTGTAAATGTTGGTTATATTTGTTTTGAGAAACTTAGTTTGGAATCCCCTTTTTTTAAAAAATATAGATTTGTGGA
TTCTTCCGTTTATGGAATTGTAGAGATCAATATCCTAGTGCATGATAGACTCTACCCTAGTATGCTGAAAACTCCAAGATCGATTACTAGTACGTGGCTGAAGTTGTACA
TAAAGTTCAAGAGTTCAGTAGAGTCGACAGGAGTCGTTAGAGGAGAACGATGTCGGCTTCACGCCGTCTTTCGGTCTAAACTAGCAGATAGGTCAGAGAGAATAGGGCCT
AATGAACCAGAAAAGATGTATAGAGTAGAACGATTGAAGAAATTAGAAGCCACCGTGTTTGAGGGTTCCTTAAATCTGGCTGACGCCAAGGTT
mRNA sequenceShow/hide mRNA sequence
ATTTAGGTTCATATTGTTTCGATGAGATGTTGAGACGGTTTCAAAAAGTGGATCTACTTGGTGTAAATGTTGGTTATATTTGTTTTGAGAAACTTAGTTTGGAATCCCCT
TTTTTTAAAAAATATAGATTTGTGGATTCTTCCGTTTATGGAATTGTAGAGATCAATATCCTAGTGCATGATAGACTCTACCCTAGTATGCTGAAAACTCCAAGATCGAT
TACTAGTACGTGGCTGAAGTTGTACATAAAGTTCAAGAGTTCAGTAGAGTCGACAGGAGTCGTTAGAGGAGAACGATGTCGGCTTCACGCCGTCTTTCGGTCTAAACTAG
CAGATAGGTCAGAGAGAATAGGGCCTAATGAACCAGAAAAGATGTATAGAGTAGAACGATTGAAGAAATTAGAAGCCACCGTGTTTGAGGGTTCCTTAAATCTGGCTGAC
GCCAAGGTTT
Protein sequenceShow/hide protein sequence
MLRRFQKVDLLGVNVGYICFEKLSLESPFFKKYRFVDSSVYGIVEINILVHDRLYPSMLKTPRSITSTWLKLYIKFKSSVESTGVVRGERCRLHAVFRSKLADRSERIGP
NEPEKMYRVERLKKLEATVFEGSLNLADAKV