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MELO3C035451 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035451
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr05:2346072..2346492
RNA-Seq ExpressionMELO3C035451
SyntenyMELO3C035451
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.7e-2988.31Show/hide
Query:  YVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK
        YVFGKDRAT ARSE FADVGSNVPN+FN  V L DSHD+DIPMMYSQGVHMSPDEMFGIRAGQASER+NCSSGSKRK
Subjt:  YVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-2682.28Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK
        +SYVFGKD+AT ARSE FADVGSN+PN+FND V LGDSH EDIP MYSQGV MS DEMFG RAGQASERRNCSS SKRK
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.5e-2984.81Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK
        +SYVFGKDRAT  RSE F+ VGSNVPN+FND V LGDSH++DIPMMYSQGVHMS DEMFGIRAGQASERRNCSSGSKRK
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK

KAA0061662.1 protein sym-1 [Cucumis melo var. makuwa]4.5e-3098.57Show/hide
Query:  KDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGS
        +DRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGS
Subjt:  KDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGS

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.0e-2986.08Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK
        +SYVFGKDRATGARSE F +VGSNV N+FND++ LGDSHDEDIP MYSQGVHMSPDEMFGIRAGQASERRNCSS SKRK
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859534.9e-3086.08Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK
        +SYVFGKDRATGARSE F +VGSNV N+FND++ LGDSHDEDIP MYSQGVHMSPDEMFGIRAGQASERRNCSS SKRK
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK

A0A5A7SQU2 Putative nuclease HARBI18.3e-3088.31Show/hide
Query:  YVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK
        YVFGKDRAT ARSE FADVGSNVPN+FN  V L DSHD+DIPMMYSQGVHMSPDEMFGIRAGQASER+NCSSGSKRK
Subjt:  YVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK

A0A5A7U0H7 Retrotransposon protein4.9e-3086.08Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK
        +SYVFGKDRATGARSE F +VGSNV N+FND++ LGDSHDEDIP MYSQGVHMSPDEMFGIRAGQASERRNCSS SKRK
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK

A0A5A7USN6 Putative nuclease HARBI14.1e-2984.81Show/hide
Query:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK
        +SYVFGKDRAT  RSE F+ VGSNVPN+FND V LGDSH++DIPMMYSQGVHMS DEMFGIRAGQASERRNCSSGSKRK
Subjt:  MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK

A0A5D3DBV3 Protein sym-12.2e-3098.57Show/hide
Query:  KDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGS
        +DRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGS
Subjt:  KDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTATGTTTTTGGCAAAGATCGGGCAACGGGAGCACGTTCAGAGATCTTTGCTGATGTAGGATCTAATGTGCCGAACGTGTTTAATGACAGTGTTTCCCTT
GGTGATTCACATGATGAAGACATTCCGATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGA
AATTGTTCAAGTGGAAGTAAGAGGAAA
mRNA sequenceShow/hide mRNA sequence
ATTTTTCTTTTAATTTTATTTAAAATTAAATCTAAAAAAATGATTTTATAATACAGAACTATTGAAAATATTTACCAGATATATAAAAATTTCATATCATCAACT
AATCTCCCTAAATTACATTTGTAAAGAGTCATCCTGCAGCCAAAGGCCTTCTACACAATCATTTCCATATTATGCTGATATGTCCTATGTTTTTGGCAAAGATCG
GGCAACGGGAGCACGTTCAGAGATCTTTGCTGATGTAGGATCTAATGTGCCGAACGTGTTTAATGACAGTGTTTCCCTTGGTGATTCACATGATGAAGACATTCC
GATGATGTATAGCCAAGGAGTGCATATGTCACCAGATGAGATGTTTGGAATACGTGCAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAA
A
Protein sequenceShow/hide protein sequence
MSYVFGKDRATGARSEIFADVGSNVPNVFNDSVSLGDSHDEDIPMMYSQGVHMSPDEMFGIRAGQASERRNCSSGSKRK