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MELO3C035502 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035502
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr12:19178789..19179250
RNA-Seq ExpressionMELO3C035502
SyntenyMELO3C035502
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.8e-1063.64Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        MSPDEM G R G++SE +NCSS SKRK+G ++YET+EVI++A+EF ND+LK IA+
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]8.6e-1270.91Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        MS DEM GTR G++SE RNCSS SKRK+G Q+YET+EVIR+AM+F ND+LK IAD
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1170.91Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        MS +EM G RVG++SE RNCSS SKRKRG ++YET+EVIR+AMEF ND+LKTIA+
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

KAA0067707.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-1170.91Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        M PDEM GT  G++SE RNCSS SKRKRG Q+YE +EVIR+AMEF ND+LK IAD
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.5e-1169.09Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        MSPDEM G R G++SE RNCSS SKRKRG + YET+EVIR+ MEF N++LK IAD
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859537.1e-1269.09Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        MSPDEM G R G++SE RNCSS SKRKRG + YET+EVIR+ MEF N++LK IAD
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

A0A5A7U0H7 Retrotransposon protein7.1e-1269.09Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        MSPDEM G R G++SE RNCSS SKRKRG + YET+EVIR+ MEF N++LK IAD
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

A0A5A7VKJ5 Retrotransposon protein7.1e-1270.91Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        M PDEM GT  G++SE RNCSS SKRKRG Q+YE +EVIR+AMEF ND+LK IAD
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

A0A5D3CT52 Retrotransposon protein7.1e-1270.91Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        MS +EM G RVG++SE RNCSS SKRKRG ++YET+EVIR+AMEF ND+LKTIA+
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

A0A5D3CVB7 Retrotransposon protein4.2e-1270.91Show/hide
Query:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD
        MS DEM GTR G++SE RNCSS SKRK+G Q+YET+EVIR+AM+F ND+LK IAD
Subjt:  MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCAGATGAGATGTTAGGAACACGTGTAGGTCGATCAAGTGAAGGAAGAAATTGTTCAAGTGAAAGTAAGAGGAAACGAGGTGGCCAAAATTATGAAACGATAGA
GGTGATCAGGAATGCGATGGAATTTGTAAATGATCGGTTAAAGACAATTGCAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATGATGGTGTTCCCCTTGGTGATTCACATGATTAAGACATCCCGACTATGATAGCCAAGGAGTGGATATGTCACCAGATGAGATGTTAGGAACACGTGTAGGTC
GATCAAGTGAAGGAAGAAATTGTTCAAGTGAAAGTAAGAGGAAACGAGGTGGCCAAAATTATGAAACGATAGAGGTGATCAGGAATGCGATGGAATTTGTAAATGATCGG
TTAAAGACAATTGCAGATTGACCAAAAGAAAAGTGTCCAATAGAGGTCGAATTACGTGTTGAAGTTGTGAAACAGCTGCAAGATATCCCTAAACTACGGAGCCAAGATAG
GTTAAAGCTTATGCAAATCATATTCCGTAGTGTGGATGATATAGAGGAATTCTTATCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCGGAAGATAATATT
TGATTAGTTGCAAGTTTTATGA
Protein sequenceShow/hide protein sequence
MSPDEMLGTRVGRSSEGRNCSSESKRKRGGQNYETIEVIRNAMEFVNDRLKTIAD