; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C035571 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035571
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr12:10282983..10283835
RNA-Seq ExpressionMELO3C035571
SyntenyMELO3C035571
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]2.0e-6850.63Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN
        MVAMFLHILAHDVK+RVI+R+FMRSGETI  HFNMVLLAVIRLH+ELLKKPQ               NCLGALDG YIKVN+PASD ARYRTRKGEVATN
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN

Query:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK-----------
        V G+CDTKGDF Y+LA                           YYYLVDVGY NAEGFLAPYRGQRYHLQ+WRG ENAPSTSKEFFNMK           
Subjt:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK-----------

Query:  --------------------------LIC----------------------------------LHLISS---------------MTSSTKLPKHNWIKEK
                                  L C                                  +H I +               MTSS++LPKH W KE+
Subjt:  --------------------------LIC----------------------------------LHLISS---------------MTSSTKLPKHNWIKEK

Query:  EANLIECLVELVNAGG
        EA L+ECLVELVNAGG
Subjt:  EANLIECLVELVNAGG

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-6755.48Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN
        MVAMFLHILAHDVKNRVIQR+FMRSGETI  HFNMVLLAVIRLHDELLKKPQ               NCLGALDG YIKVN+PASD ARYRTRKGEVATN
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN

Query:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK-----------
        V G+ DTKGDF Y+L                            YYYLVD GY NAEGFLAPYRGQRYHLQ+WRG +NAPSTSKEFFNMK           
Subjt:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK-----------

Query:  --------------------------LICLHL----------------ISSMTSSTKLPKHNWIKEKEANLIECLVELVNAGG
                                  L C  L                I SMTSS++LPKH W KE+EA     LVELVNAGG
Subjt:  --------------------------LICLHL----------------ISSMTSSTKLPKHNWIKEKEANLIECLVELVNAGG

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]8.8e-6470.37Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN
        MVAMFLHILAHDVKNRVIQR+FMRSGETI  HFNMVLLAVIRLHDELLKKPQ               NCLGALDG YIKVN+PASD ARYRTRKGEVATN
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN

Query:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK
        V G+CDTKGDF Y+LA                           YYYLVD GY NAEGFLAPYRGQRYHLQ+WRG ENAPSTSKEFFNMK
Subjt:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK

TYK02751.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.1e-6662.61Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN
        MVAMFLHI+AHDVKNRVIQR+FMRSGETI  HFNMVLL VIRLHD+LLKKPQ               NCLGALDG YIKVN+PASD ARYRT KGEVATN
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN

Query:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMT
        V GLCDTKGDF Y+LA                           YYYLVD GY N +GFLA YRGQRYHLQ+WRG ENAPSTSKEFFNMK        S  
Subjt:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMT

Query:  SSTKLPKHNWIKEKEANLIECLVELVNAGG
         +T        KE+EA L+ECLVELVN GG
Subjt:  SSTKLPKHNWIKEKEANLIECLVELVNAGG

TYK20320.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-8185.19Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCLGALDGMYIKVNIPASDGARYRTRKGEVATNVHGLCDTKGDFAYI
        MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCLGALDGMYIKVNIPA+  +    R   +  NV  +   KG     
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCLGALDGMYIKVNIPASDGARYRTRKGEVATNVHGLCDTKGDFAYI

Query:  LASYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMTSSTKLPKHNWIKEKEANLIECLVELVNAG
           YYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMTSSTKLPKHNWIKEKEANLIECLVELVNAG
Subjt:  LASYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMTSSTKLPKHNWIKEKEANLIECLVELVNAG

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein1.8e-6755.48Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN
        MVAMFLHILAHDVKNRVIQR+FMRSGETI  HFNMVLLAVIRLHDELLKKPQ               NCLGALDG YIKVN+PASD ARYRTRKGEVATN
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN

Query:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK-----------
        V G+ DTKGDF Y+L                            YYYLVD GY NAEGFLAPYRGQRYHLQ+WRG +NAPSTSKEFFNMK           
Subjt:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK-----------

Query:  --------------------------LICLHL----------------ISSMTSSTKLPKHNWIKEKEANLIECLVELVNAGG
                                  L C  L                I SMTSS++LPKH W KE+EA     LVELVNAGG
Subjt:  --------------------------LICLHL----------------ISSMTSSTKLPKHNWIKEKEANLIECLVELVNAGG

A0A5A7TXW1 Retrotransposon protein4.2e-6470.37Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN
        MVAMFLHILAHDVKNRVIQR+FMRSGETI  HFNMVLLAVIRLHDELLKKPQ               NCLGALDG YIKVN+PASD ARYRTRKGEVATN
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN

Query:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK
        V G+CDTKGDF Y+LA                           YYYLVD GY NAEGFLAPYRGQRYHLQ+WRG ENAPSTSKEFFNMK
Subjt:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK

A0A5D3BSN2 Putative nuclease HARBI15.4e-6762.61Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN
        MVAMFLHI+AHDVKNRVIQR+FMRSGETI  HFNMVLL VIRLHD+LLKKPQ               NCLGALDG YIKVN+PASD ARYRT KGEVATN
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN

Query:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMT
        V GLCDTKGDF Y+LA                           YYYLVD GY N +GFLA YRGQRYHLQ+WRG ENAPSTSKEFFNMK        S  
Subjt:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMT

Query:  SSTKLPKHNWIKEKEANLIECLVELVNAGG
         +T        KE+EA L+ECLVELVN GG
Subjt:  SSTKLPKHNWIKEKEANLIECLVELVNAGG

A0A5D3DA20 Retrotransposon protein1.3e-8185.19Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCLGALDGMYIKVNIPASDGARYRTRKGEVATNVHGLCDTKGDFAYI
        MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCLGALDGMYIKVNIPA+  +    R   +  NV  +   KG     
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCLGALDGMYIKVNIPASDGARYRTRKGEVATNVHGLCDTKGDFAYI

Query:  LASYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMTSSTKLPKHNWIKEKEANLIECLVELVNAG
           YYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMTSSTKLPKHNWIKEKEANLIECLVELVNAG
Subjt:  LASYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMTSSTKLPKHNWIKEKEANLIECLVELVNAG

E5GCB5 Retrotransposon protein9.8e-6950.63Show/hide
Query:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN
        MVAMFLHILAHDVK+RVI+R+FMRSGETI  HFNMVLLAVIRLH+ELLKKPQ               NCLGALDG YIKVN+PASD ARYRTRKGEVATN
Subjt:  MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQ--------------HNCLGALDGMYIKVNIPASDGARYRTRKGEVATN

Query:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK-----------
        V G+CDTKGDF Y+LA                           YYYLVDVGY NAEGFLAPYRGQRYHLQ+WRG ENAPSTSKEFFNMK           
Subjt:  VHGLCDTKGDFAYILA--------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMK-----------

Query:  --------------------------LIC----------------------------------LHLISS---------------MTSSTKLPKHNWIKEK
                                  L C                                  +H I +               MTSS++LPKH W KE+
Subjt:  --------------------------LIC----------------------------------LHLISS---------------MTSSTKLPKHNWIKEK

Query:  EANLIECLVELVNAGG
        EA L+ECLVELVNAGG
Subjt:  EANLIECLVELVNAGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein1.6e-1027.14Show/hide
Query:  VAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCL---------------------GALDGMYIKVNIPASDGARYRTRK
        VAMFL I  H+   R +  +F R+ ET+   F  VL A   L  + ++ P    L                     GA+DG ++ V +       Y  R 
Subjt:  VAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCL---------------------GALDGMYIKVNIPASDGARYRTRK

Query:  GEVATNVHGLCDTKGDFAYIL---------------------------ASYYYLVDVGYLNAEGFLAPYRGQ-----RYHLQKWRGAENAPSTSKEFFN
           + N+  +CD K  F YI                            +  YYLVD GY N +G LAPYR       RYH+ ++      P    E FN
Subjt:  GEVATNVHGLCDTKGDFAYIL---------------------------ASYYYLVDVGYLNAEGFLAPYRGQ-----RYHLQKWRGAENAPSTSKEFFN

AT5G28730.1 unknown protein5.2e-0629.38Show/hide
Query:  VAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCLGALDGMYIKVNIPASDGARY----RTRKGEVATNVHGLCDTKGDF
        VA+FL I A +   R I  +F  + ETI+  F+ VL A+ RL  E ++  +   L A+            D  RY        G  + NV  +CD    F
Subjt:  VAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCLGALDGMYIKVNIPASDGARY----RTRKGEVATNVHGLCDTKGDF

Query:  AYILA---------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQ
         Y                              S YYLVD GY N  G+LAPYR +    Q
Subjt:  AYILA---------------------------SYYYLVDVGYLNAEGFLAPYRGQRYHLQ

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)4.3e-0848.98Show/hide
Query:  YYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICL
        +YLVD G+ N   FLAP+RG RYHLQ++ G    P T  E FN++ + L
Subjt:  YYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICL

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)4.0e-1427.75Show/hide
Query:  VAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQH------------NCLGALDGMYIKVNIPASDGARYRTRKGEVATNVHG
        +A+FL I+ H+++ R +Q  F  SGETI  HFN VL AVI +  +  +   +            +C+G +D  +I V +   +   +R   G +  NV  
Subjt:  VAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQH------------NCLGALDGMYIKVNIPASDGARYRTRKGEVATNVHG

Query:  LCDTKGDFAYILASY--------------------------YYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLH
               F Y+LA +                          YY+VD  Y N  GF+APY G          + N+   +KE FN +   LH
Subjt:  LCDTKGDFAYILASY--------------------------YYLVDVGYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGCAATGTTCCTCCACATTCTTGCGCACGACGTGAAAAATCGTGTCATTCAACGGAAGTTCATGCGATCGGGTGAGACAATTTTTCATCATTTCAACATGGTTTT
GTTGGCCGTTATTCGACTTCATGACGAGCTTTTGAAAAAACCACAACATAATTGCCTAGGTGCATTAGATGGAATGTACATAAAAGTCAACATTCCAGCAAGTGACGGGG
CTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACATGGCTTGTGTGACACAAAAGGAGATTTCGCTTACATACTTGCCAGCTATTACTACCTGGTTGATGTC
GGGTACCTAAATGCAGAGGGTTTTCTGGCACCGTACAGAGGCCAACGTTACCACTTACAGAAATGGCGTGGTGCTGAAAATGCACCTTCAACGTCGAAAGAGTTCTTCAA
TATGAAACTAATATGTTTGCATTTGATTTCTAGCATGACAAGTTCAACGAAACTACCTAAACACAATTGGATTAAAGAGAAAGAGGCAAACCTCATCGAGTGTCTCGTGG
AGTTAGTCAATGCTGGTGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGCAATGTTCCTCCACATTCTTGCGCACGACGTGAAAAATCGTGTCATTCAACGGAAGTTCATGCGATCGGGTGAGACAATTTTTCATCATTTCAACATGGTTTT
GTTGGCCGTTATTCGACTTCATGACGAGCTTTTGAAAAAACCACAACATAATTGCCTAGGTGCATTAGATGGAATGTACATAAAAGTCAACATTCCAGCAAGTGACGGGG
CTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACATGGCTTGTGTGACACAAAAGGAGATTTCGCTTACATACTTGCCAGCTATTACTACCTGGTTGATGTC
GGGTACCTAAATGCAGAGGGTTTTCTGGCACCGTACAGAGGCCAACGTTACCACTTACAGAAATGGCGTGGTGCTGAAAATGCACCTTCAACGTCGAAAGAGTTCTTCAA
TATGAAACTAATATGTTTGCATTTGATTTCTAGCATGACAAGTTCAACGAAACTACCTAAACACAATTGGATTAAAGAGAAAGAGGCAAACCTCATCGAGTGTCTCGTGG
AGTTAGTCAATGCTGGTGGGTAG
Protein sequenceShow/hide protein sequence
MVAMFLHILAHDVKNRVIQRKFMRSGETIFHHFNMVLLAVIRLHDELLKKPQHNCLGALDGMYIKVNIPASDGARYRTRKGEVATNVHGLCDTKGDFAYILASYYYLVDV
GYLNAEGFLAPYRGQRYHLQKWRGAENAPSTSKEFFNMKLICLHLISSMTSSTKLPKHNWIKEKEANLIECLVELVNAGG