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MELO3C035588 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035588
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr04:8508243..8509243
RNA-Seq ExpressionMELO3C035588
SyntenyMELO3C035588
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035413.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-7386.34Show/hide
Query:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM
        MFHAIAEM GPTCS FGWNDEQKCIVAEKEVFDNWVKSH  AKGLLNK FP+YDELSYVF KDRAT G+AESFAD+G NDPAGYEPFA +ATPD DFQPM
Subjt:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM

Query:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE
        YSQGLNMSPDELM   NA+VSEGRYVSSGSKRKR GQA DSGD+LRTAIEYGNEQLN IAE
Subjt:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE

KAA0036771.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-7194.37Show/hide
Query:  MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPMYSQGLNM
        MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPMYSQGLNM
Subjt:  MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPMYSQGLNM

Query:  SPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAI
        SPDELMEAGNARVSEGRYVSSGSKRKRGGQAED+    R  +
Subjt:  SPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAI

KAA0037173.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-6578.88Show/hide
Query:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM
        MFHAI EM GPTC+GFGWNDEQKCIVAEKEVFD+WVKSHLAAKGL NK F +YDELSYVF KDRAT G+ ESFADVGSNDP GYE FA  A  D DFQPM
Subjt:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM

Query:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE
        Y+Q LNMSP ELM    ARVSEGRYVSSGSK+KRGGQ  DSGD+L TA+EYGN QLN IAE
Subjt:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-7183.85Show/hide
Query:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM
        MFHAI EMRGPTCSGFGWNDEQKCIVAEKEVFD+WV+SH AAKGLLNK FP+YDELSYVF KD AT G+AESFADVGSNDP GY+ FAANA  D DFQPM
Subjt:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM

Query:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE
        YS+GLNMSPDELM    ARVSEGRYVSSGSK+KRGG   DSGDILRTAIEYGNEQLN IAE
Subjt:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-6578.26Show/hide
Query:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM
        MFHA+AEMRGP CSGFGWNDE+KCIV EKE+FD+WVKSH AAKGLLNK F +YDELSYVF KDRAT G+AESFAD+GSNDP GY+  AA+A PD DF PM
Subjt:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM

Query:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE
        YS GLNMSPD+LME   ARVSE R VSSGSKRKR G A DSGDI+RTAIEYGNEQL+ IAE
Subjt:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE

TrEMBL top hitse value%identityAlignment
A0A5A7SXX8 Retrotransposon protein1.5e-7386.34Show/hide
Query:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM
        MFHAIAEM GPTCS FGWNDEQKCIVAEKEVFDNWVKSH  AKGLLNK FP+YDELSYVF KDRAT G+AESFAD+G NDPAGYEPFA +ATPD DFQPM
Subjt:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM

Query:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE
        YSQGLNMSPDELM   NA+VSEGRYVSSGSKRKR GQA DSGD+LRTAIEYGNEQLN IAE
Subjt:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE

A0A5A7T2H9 Retrotransposon protein1.5e-6578.88Show/hide
Query:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM
        MFHAI EM GPTC+GFGWNDEQKCIVAEKEVFD+WVKSHLAAKGL NK F +YDELSYVF KDRAT G+ ESFADVGSNDP GYE FA  A  D DFQPM
Subjt:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM

Query:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE
        Y+Q LNMSP ELM    ARVSEGRYVSSGSK+KRGGQ  DSGD+L TA+EYGN QLN IAE
Subjt:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE

A0A5A7T5D2 Retrotransposon protein1.4e-7194.37Show/hide
Query:  MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPMYSQGLNM
        MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPMYSQGLNM
Subjt:  MRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPMYSQGLNM

Query:  SPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAI
        SPDELMEAGNARVSEGRYVSSGSKRKRGGQAED+    R  +
Subjt:  SPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAI

A0A5A7TZA5 Retrotransposon protein3.0e-7183.85Show/hide
Query:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM
        MFHAI EMRGPTCSGFGWNDEQKCIVAEKEVFD+WV+SH AAKGLLNK FP+YDELSYVF KD AT G+AESFADVGSNDP GY+ FAANA  D DFQPM
Subjt:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM

Query:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE
        YS+GLNMSPDELM    ARVSEGRYVSSGSK+KRGG   DSGDILRTAIEYGNEQLN IAE
Subjt:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE

A0A5D3C1M0 Retrotransposon protein3.3e-6578.26Show/hide
Query:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM
        MFHA+AEMRGP CSGFGWNDE+KCIV EKE+FD+WVKSH AAKGLLNK F +YDELSYVF KDRAT G+AESFAD+GSNDP GY+  AA+A PD DF PM
Subjt:  MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPM

Query:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE
        YS GLNMSPD+LME   ARVSE R VSSGSKRKR G A DSGDI+RTAIEYGNEQL+ IAE
Subjt:  YSQGLNMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein7.1e-0426.83Show/hide
Query:  GFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDP-AGYEPFAANATPDM
        GF W++E++ + A+  V+ +++K+H  A+  + +  PYY +L  V   D   + + E F  +   DP   ++ F ++ T D+
Subjt:  GFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDP-AGYEPFAANATPDM

AT4G02210.2 unknown protein7.1e-0426.83Show/hide
Query:  GFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDP-AGYEPFAANATPDM
        GF W++E++ + A+  V+ +++K+H  A+  + +  PYY +L  V   D   + + E F  +   DP   ++ F ++ T D+
Subjt:  GFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDP-AGYEPFAANATPDM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGATTTGGGTGGAATGATGAACAAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGATAATTGG
GTCAAGAGTCATCTCGCGGCCAAGGGCCTCCTTAATAAGTTGTTTCCATACTATGACGAACTGTCGTATGTGTTTGACAAAGATCGTGCAACGGATGGCCAGGCC
GAGAGTTTTGCAGACGTTGGGTCAAACGATCCTGCTGGGTACGAGCCATTTGCCGCTAACGCTACGCCGGATATGGACTTCCAGCCTATGTACAGTCAAGGATTG
AACATGTCGCCTGATGAATTGATGGAAGCAGGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTTCGAGCGGATCTAAGCGGAAACGTGGAGGACAGGCCGAAGAC
AGTGGGGACATACTTCGCACTGCAATTGAGTATGGAAATGAACAATTGAACCTCATTGCTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCAACGATCGATAGCTGAATAAAATTGTTGAAGAGAATGTTTCATGCAATTGCGGAGATGCGTGGCCCAACTTGCAGTGGATTTGGGTGGAATGATGAAC
AAAAATGCATCGTCGCAGAGAAAGAAGTCTTCGATAATTGGGTCAAGAGTCATCTCGCGGCCAAGGGCCTCCTTAATAAGTTGTTTCCATACTATGACGAACTGT
CGTATGTGTTTGACAAAGATCGTGCAACGGATGGCCAGGCCGAGAGTTTTGCAGACGTTGGGTCAAACGATCCTGCTGGGTACGAGCCATTTGCCGCTAACGCTA
CGCCGGATATGGACTTCCAGCCTATGTACAGTCAAGGATTGAACATGTCGCCTGATGAATTGATGGAAGCAGGAAATGCTCGGGTAAGTGAAGGTAGGTATGTTT
CGAGCGGATCTAAGCGGAAACGTGGAGGACAGGCCGAAGACAGTGGGGACATACTTCGCACTGCAATTGAGTATGGAAATGAACAATTGAACCTCATTGCTGAAT
GACCTGTCCTACAACGTCAAGACGCAAGCCAAACACGTCAAGAGGTTGTCCGACAGTTGGAGGCCATCCTTGAGCTGACATTGATGGATAGATGTCGCTTAATGC
GTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAGGTTCCCGACAATATGAAGTACCCGTACTACAACATCATTCTTCAAGAAAACCGATGACTAG
TTTGTTTGTTCTATTTGTATTGGTGGTTTTTTGTACTTGGACTATATATTCATTAATTTACTTATTTTGTCTTATTATCTAACAAAATTCTCTTTCTCTTCAAGC
TTGGTTTGTATTTTCATTTCGCTTTCCAATGTAATGGTTTGATATTGTTGTATTATCGTATTAATGTACTGTTTTCGTTCAA
Protein sequenceShow/hide protein sequence
MFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVKSHLAAKGLLNKLFPYYDELSYVFDKDRATDGQAESFADVGSNDPAGYEPFAANATPDMDFQPMYSQGL
NMSPDELMEAGNARVSEGRYVSSGSKRKRGGQAEDSGDILRTAIEYGNEQLNLIAE