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MELO3C035600 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035600
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr10:11508794..11509743
RNA-Seq ExpressionMELO3C035600
SyntenyMELO3C035600
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0015689 - molybdate ion transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0015098 - molybdate ion transmembrane transporter activity (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR008509 - Molybdate-anion transporter
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061775.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]9.1e-2893.75Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAET+ KTFDKMK+LGFEPN VTFT
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT

KAA0063703.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.7e-3773.5Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFTRGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVD
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT                     +V+  T L     VD
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFTRGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVD

Query:  SQSLGPVIPFDAAACLL
        SQSLGPVIPFDAAACLL
Subjt:  SQSLGPVIPFDAAACLL

TYJ96117.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]2.6e-2793.75Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAET  KTFDKMK+LGFEPN VTFT
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT

XP_004140282.1 pentatricopeptide repeat-containing protein At5g27110 [Cucumis sativus]1.3e-2692.19Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAE   KTFDKMK+LGFEPN VTFT
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT

XP_008449942.1 PREDICTED: pentatricopeptide repeat-containing protein At5g27110-like [Cucumis melo]2.6e-2793.75Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAET  KTFDKMK+LGFEPN VTFT
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT

TrEMBL top hitse value%identityAlignment
A0A0A0KK21 Uncharacterized protein6.3e-2792.19Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAE   KTFDKMK+LGFEPN VTFT
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT

A0A1S3BP46 pentatricopeptide repeat-containing protein At5g27110-like1.3e-2793.75Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAET  KTFDKMK+LGFEPN VTFT
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT

A0A5A7V7D4 Pentatricopeptide repeat-containing protein4.4e-2893.75Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAET+ KTFDKMK+LGFEPN VTFT
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT

A0A5D3BAG7 Pentatricopeptide repeat-containing protein1.3e-2793.75Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAET  KTFDKMK+LGFEPN VTFT
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT

A0A5D3DUZ1 Pentatricopeptide repeat-containing protein1.8e-3773.5Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFTRGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVD
        MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT                     +V+  T L     VD
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFTRGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVD

Query:  SQSLGPVIPFDAAACLL
        SQSLGPVIPFDAAACLL
Subjt:  SQSLGPVIPFDAAACLL

SwissProt top hitse value%identityAlignment
O04659 Pentatricopeptide repeat-containing protein At5g271101.9e-1246.88Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        + MYAK + F +++++FDE P+RDV  WN VISC+++ G+AE   + F +M+  GFEPN V+ T
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT

O23491 Pentatricopeptide repeat-containing protein At4g164706.3e-0842.86Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTF
        ++MY KC  F D  ++FD+   R+V  W ++IS Y   GK   + K F+KMK+ G  PN VTF
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTF

Q1PFQ9 Pentatricopeptide repeat-containing protein At1g28690, mitochondrial4.9e-0839.68Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTF
        ++MYAKC    DA ++FD+  +++V  W ++I  Y K+G  E   + F +MK+   EPN+VTF
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTF

Q9FM64 Pentatricopeptide repeat-containing protein At5g55740, chloroplastic4.9e-0844.26Show/hide
Query:  NMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVT
        +MY KC    DA K+FDE P R+   WNA++  Y ++GK E   + F  M+K G EP  VT
Subjt:  NMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVT

Q9SN85 Pentatricopeptide repeat-containing protein At3g475306.3e-0842.31Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMK
        M++Y+ C+   DA K+FDE P+RD   WN + SCY ++ +   +   FDKMK
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMK

Arabidopsis top hitse value%identityAlignment
AT1G64650.1 Major facilitator superfamily protein9.7e-2081.82Show/hide
Query:  RGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVDSQSLGPVIPFDAAACLLVM
        RGF+QQWLS+TFSKAIFLGNGLVAI+ GLFGN LVDS SLGPV PFDAAAC L +
Subjt:  RGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVDSQSLGPVIPFDAAACLLVM

AT1G64650.2 Major facilitator superfamily protein9.7e-2081.82Show/hide
Query:  RGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVDSQSLGPVIPFDAAACLLVM
        RGF+QQWLS+TFSKAIFLGNGLVAI+ GLFGN LVDS SLGPV PFDAAAC L +
Subjt:  RGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVDSQSLGPVIPFDAAACLLVM

AT3G49310.1 Major facilitator superfamily protein1.8e-1876.36Show/hide
Query:  RGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVDSQSLGPVIPFDAAACLLVM
        R F+QQWLS+TFSKA+FLGNGLVAIL+GLFGN+LVD+ S GPV PFDAAAC L +
Subjt:  RGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVDSQSLGPVIPFDAAACLLVM

AT4G27720.1 Major facilitator superfamily protein6.3e-1976.36Show/hide
Query:  RGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVDSQSLGPVIPFDAAACLLVM
        RGF+QQWLS+TFSKA+F GNGLVAI+ GLFGN+LVD+ SLGPV PFDAAAC L +
Subjt:  RGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVDSQSLGPVIPFDAAACLLVM

AT5G27110.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.4e-1346.88Show/hide
Query:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT
        + MYAK + F +++++FDE P+RDV  WN VISC+++ G+AE   + F +M+  GFEPN V+ T
Subjt:  MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATGTATGCTAAATGTGATCAGTTTGTTGATGCCATTAAGCTGTTCGATGAATTTCCTCAGAGAGATGTGGGGTGTTGGAATGCAGTTATCTCTTGTTAT
TTTAAAGATGGTAAGGCTGAGACTATATCGAAGACGTTTGATAAAATGAAAAAGTTGGGTTTTGAGCCTAATTTTGTGACTTTTACTAGGGGATTTAAACAGCAA
TGGTTGTCTATTACGTTCTCAAAGGCTATTTTTCTTGGCAATGGTCTTGTTGCAATTCTTACTGGGTTGTTTGGGAATGTATTAGTCGATAGTCAGTCTCTTGGA
CCAGTGATACCTTTTGATGCTGCTGCATGCCTTCTTGTAATGATTACATTTTTTTTTTCATTTGATTACATTTCCTGA
mRNA sequenceShow/hide mRNA sequence
TAGGGAGTTCTTTAATGAATATGTATGCTAAATGTGATCAGTTTGTTGATGCCATTAAGCTGTTCGATGAATTTCCTCAGAGAGATGTGGGGTGTTGGAATGCAG
TTATCTCTTGTTATTTTAAAGATGGTAAGGCTGAGACTATATCGAAGACGTTTGATAAAATGAAAAAGTTGGGTTTTGAGCCTAATTTTGTGACTTTTACTAGGG
GATTTAAACAGCAATGGTTGTCTATTACGTTCTCAAAGGCTATTTTTCTTGGCAATGGTCTTGTTGCAATTCTTACTGGGTTGTTTGGGAATGTATTAGTCGATA
GTCAGTCTCTTGGACCAGTGATACCTTTTGATGCTGCTGCATGCCTTCTTGTAATGATTACATTTTTTTTTTCATTTGATTACATTTCCTGAAAGCCTAAAGTCT
TAGCAAGGGTTTTAATTTCTCCCACCATAAATACTTCACTAAAGAAATCTTATAAATTTGCCACGACCAAATTAAACAAATTTCAAAAAAATATAGTAATCAAAT
GAATTTGCAATGTAAACACATGCTTTCTTTCAATTGATTGGATTACATTATTCTGTATATTGTGCAGTTTACATTACAAATTCATTACAAATATTGCCACGAGTT
ATTGTATAATGTGCAGTTTACATTACAAATTCATTTGATTACATTATTCTGTCAA
Protein sequenceShow/hide protein sequence
MNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAETISKTFDKMKKLGFEPNFVTFTRGFKQQWLSITFSKAIFLGNGLVAILTGLFGNVLVDSQSLG
PVIPFDAAACLLVMITFFFSFDYIS