CuGenDBv2

Gene ID	MELO3C035667
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Cleavage and polyadenylation specificity factor subunit 2
Genome location	chr12:17090652..17092378
RNA-Seq Expression	MELO3C035667
Synteny	MELO3C035667
Gene Ontology terms	GO:0006378 - mRNA polyadenylation (biological process) GO:0006398 - mRNA 3'-end processing by stem-loop binding and cleavage (biological process) GO:0098789 - pre-mRNA cleavage required for polyadenylation (biological process) GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR025069 - Cleavage and polyadenylation specificity factor 2, C-terminal IPR027075 - Cleavage and polyadenylation specificity factor subunit 2

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576721.1 Cleavage and polyadenylation specificity factor subunit 2, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-40

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKA   HKSVLVGDLKM +FKQFL++KGIQVEFAGGALRCGEYVTLRKV++ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

KAG7014767.1 Cleavage and polyadenylation specificity factor subunit 2 [Cucurbita argyrosperma subsp. argyrosperma]

3.0e-40

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKA   HKSVLVGDLKM +FKQFL++KGIQVEFAGGALRCGEYVTLRKV++ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

XP_004140773.1 cleavage and polyadenylation specificity factor subunit 2 [Cucumis sativus]

1.4e-42

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKAPA HKSVLVGDLKM +FKQFLA+KGIQVEFAGGALRCGEYVTLRKVT+ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

XP_008439247.1 PREDICTED: cleavage and polyadenylation specificity factor subunit 2 [Cucumis melo]

1.4e-42

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKAPA HKSVLVGDLKM +FKQFLA+KGIQVEFAGGALRCGEYVTLRKVT+ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

XP_023552428.1 cleavage and polyadenylation specificity factor subunit 2 [Cucurbita pepo subsp. pepo]

3.0e-40

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKA   HKSVLVGDLKM +FKQFL++KGIQVEFAGGALRCGEYVTLRKV++ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBF9 Cleavage and polyadenylation specificity factor subunit 2

6.9e-43

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKAPA HKSVLVGDLKM +FKQFLA+KGIQVEFAGGALRCGEYVTLRKVT+ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

A0A1S3AXY2 Cleavage and polyadenylation specificity factor subunit 2

6.9e-43

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKAPA HKSVLVGDLKM +FKQFLA+KGIQVEFAGGALRCGEYVTLRKVT+ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

A0A6J1CGU1 Cleavage and polyadenylation specificity factor subunit 2

3.2e-40

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKA   HKSVLVGDLKM ++KQFLA+KGIQVEFAGGALRCGEYVT+RKV +ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

A0A6J1CHF7 Cleavage and polyadenylation specificity factor subunit 2

3.2e-40

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKA   HKSVLVGDLKM ++KQFLA+KGIQVEFAGGALRCGEYVT+RKV +ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

A0A6J1E3G2 Cleavage and polyadenylation specificity factor subunit 2

1.4e-40

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        KT+NGTLSL PLSKA   HKSVLVGDLKM +FKQFL++KGIQVEFAGGALRCGEYVTLRKV++ASQKGGGSGTQQVVIE PLCEDYYKI++LLYSQFYLL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

SwissProt top hits

e value

%identity

Alignment

O35218 Cleavage and polyadenylation specificity factor subunit 2

9.7e-10

35.79

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Query:  TLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        TL   P  + P  H+SV + + ++ +FKQ L  +GIQ EF GG L C   V +R+          + T ++ +E  LC+D+Y+I+DLLY Q+ ++
Subjt:  TLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

Q10568 Cleavage and polyadenylation specificity factor subunit 2

9.7e-10

35.79

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Query:  TLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        TL   P  + P  H+SV + + ++ +FKQ L  +GIQ EF GG L C   V +R+          + T ++ +E  LC+D+Y+I+DLLY Q+ ++
Subjt:  TLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

Q652P4 Cleavage and polyadenylation specificity factor subunit 2

6.1e-36

63.25

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Query:  LGRRFDVKDVAHVKFDRKTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLC
        + ++    ++A V  +    +  L+L P S  PAAHKSVLVGDLK+ +FKQFLANKG+QVEFAGGALRCGEY+TLRK+ +A QK G +G+QQ+VIE PLC
Subjt:  LGRRFDVKDVAHVKFDRKTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLC

Query:  EDYYKIQDLLYSQFYLL
        EDYYKI++LLYSQFYLL
Subjt:  EDYYKIQDLLYSQFYLL

Q9LKF9 Cleavage and polyadenylation specificity factor subunit 2

1.1e-32

69.31

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFA-GGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYL
        KT+    SL P+  A + HK VLVGDLK+ +FKQFL++KG+QVEFA GGALRCGEYVTLRKV    QKGG SG QQ++IE PLCEDYYKI+D LYSQFYL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFA-GGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYL

Query:  L
        L
Subjt:  L

Q9P2I0 Cleavage and polyadenylation specificity factor subunit 2

9.7e-10

35.79

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Query:  TLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL
        TL   P  + P  H+SV + + ++ +FKQ L  +GIQ EF GG L C   V +R+          + T ++ +E  LC+D+Y+I+DLLY Q+ ++
Subjt:  TLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

Arabidopsis top hits

e value

%identity

Alignment

AT5G23880.1 cleavage and polyadenylation specificity factor 100

7.6e-34

69.31

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Query:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFA-GGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYL
        KT+    SL P+  A + HK VLVGDLK+ +FKQFL++KG+QVEFA GGALRCGEYVTLRKV    QKGG SG QQ++IE PLCEDYYKI+D LYSQFYL
Subjt:  KTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFA-GGALRCGEYVTLRKVTNASQKGGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYL

Query:  L
        L
Subjt:  L

Sequences

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CDS sequence

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ATGGATTACTCACGTGGAGTTTCAGTGGCCACTCCGCTGTTAACATCAGAAATTCGAAGATCGTCCTGTAGAGATCGGTTAGGACGAAGATTTGATGTAAAGGATGTTGC
TCATGTCAAGTTTGACAGGAAGACTAAGAATGGAACGTTATCTTTATTTCCTCTCTCAAAGGCTCCTGCGGCTCATAAATCTGTTCTTGTTGGTGATTTAAAAATGGTCA
ACTTCAAACAATTTCTTGCCAACAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCCTACGCAAGGTTACAAATGCAAGTCAAAAG
GGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGAGCCCTTATGTGAGGATTATTATAAAATTCAGGATCTATTGTATTCACAATTTTATTTGTTATAA

mRNA sequence

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Protein sequence

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MDYSRGVSVATPLLTSEIRRSSCRDRLGRRFDVKDVAHVKFDRKTKNGTLSLFPLSKAPAAHKSVLVGDLKMVNFKQFLANKGIQVEFAGGALRCGEYVTLRKVTNASQK
GGGSGTQQVVIEEPLCEDYYKIQDLLYSQFYLL

MELO3C035667 (gene) of Melon (DHL92) v4 genome