CuGenDBv2

Gene ID	MELO3C035679
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	primase homolog protein isoform X2
Genome location	chr12:17891642..17896637
RNA-Seq Expression	MELO3C035679
Synteny	MELO3C035679
Gene Ontology terms	GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008445790.1 PREDICTED: primase homolog protein isoform X2 [Cucumis melo]

1.8e-161

73.89

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPP                      VKVLREKMDLIGIV
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV

Query:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM
        CDEHCIPGKYYCLFCPK    RL  +  S +    G+  +  C   +  W   IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDE            
Subjt:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM

Query:  SFLGAGLISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPLK
              LISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                  
Subjt:  SFLGAGLISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPLK

Query:  VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEEL
        VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIE                        KDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEEL
Subjt:  VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEEL

Query:  ARRLGKHRCWRVDWPYKDGFNRFKDANEV
        ARRLGKHRCWRVDWPYKDGFNRFKDANEV
Subjt:  ARRLGKHRCWRVDWPYKDGFNRFKDANEV

XP_016899150.1 PREDICTED: primase homolog protein isoform X1 [Cucumis melo]

4.3e-160

73.72

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPP                      VKVLREKMDLIGIV
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV

Query:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM
        CDEHCIPGKYYCLFCPK    RL  +  S +    G+  +  C   +  W   IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDE            
Subjt:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM

Query:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL
              LISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                 
Subjt:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL

Query:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
         VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIE                        KDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
Subjt:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE

Query:  LARRLGKHRCWRVDWPYKDGFNRFKDANEV
        LARRLGKHRCWRVDWPYKDGFNRFKDANEV
Subjt:  LARRLGKHRCWRVDWPYKDGFNRFKDANEV

XP_016899152.1 PREDICTED: primase homolog protein isoform X4 [Cucumis melo]

1.3e-159

73.66

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPP                      VKVLREKMDLIGIV
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV

Query:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM
        CDEHCIPGKYYCLFCPK    RL  +  S +    G+  +  C   +  W   IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDE            
Subjt:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM

Query:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL
              LISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                 
Subjt:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL

Query:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
         VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIE                        KDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
Subjt:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE

Query:  LARRLGKHRCWRVDWPYKDGFNRFKDANE
        LARRLGKHRCWRVDWPYKDGFNRFKDANE
Subjt:  LARRLGKHRCWRVDWPYKDGFNRFKDANE

XP_031736130.1 primase homolog protein isoform X2 [Cucumis sativus]

8.4e-164

73.99

Show/hide

Query:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGI
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPP                      VK L E+MDL+GI
Subjt:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGI

Query:  VCDEHCIPGKYYCLFCPKIYSRLTVQGWSFNGEELISSCDSNWIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVMSFLGAGLISY
        VCDEHCIPGKYYCLFCPKI SRLTVQGWSFNGEELISSCDSNWIFADG+LAFNGF K  KMVGRSSKESLVLEPLCDE                  LISY
Subjt:  VCDEHCIPGKYYCLFCPKIYSRLTVQGWSFNGEELISSCDSNWIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVMSFLGAGLISY

Query:  FSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPLKVEGEMDKLSV
        FSMRMISQETLERNVVMQ+ GRQV IAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                  VEGEMDKLSV
Subjt:  FSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPLKVEGEMDKLSV

Query:  EEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCW
        EEAGFLNCISVPGGAP+KVSTDT+PPIE                        KD+AYQYLW CKDYLDKVSR+ILATDSDVPGQALAEELARRLGK+RCW
Subjt:  EEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCW

Query:  RVDWPYKDGFNRFKDANEV
        RV WPYKDGFNRFKDANEV
Subjt:  RVDWPYKDGFNRFKDANEV

XP_031736132.1 primase homolog protein isoform X4 [Cucumis sativus]

5.5e-147

68.02

Show/hide

Query:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGI
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPP                      VK L E+MDL+GI
Subjt:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGI

Query:  VCDEHCIPGKYYCLFCPKIYSRLTVQGWSFNGEELISSCDSNWIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVMSFLGAGLISY
        VCDEHCIPGKYYCLFCPKI SRLTVQGWSFNGEELISSCDSNWIFADG+LAFNGF K  KMVGRSSKESLVLEPLCDE                      
Subjt:  VCDEHCIPGKYYCLFCPKIYSRLTVQGWSFNGEELISSCDSNWIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVMSFLGAGLISY

Query:  FSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPLKVEGEMDKLSV
                               V IAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                  VEGEMDKLSV
Subjt:  FSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPLKVEGEMDKLSV

Query:  EEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCW
        EEAGFLNCISVPGGAP+KVSTDT+PPIE                        KD+AYQYLW CKDYLDKVSR+ILATDSDVPGQALAEELARRLGK+RCW
Subjt:  EEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCW

Query:  RVDWPYKDGFNRFKDANEV
        RV WPYKDGFNRFKDANEV
Subjt:  RVDWPYKDGFNRFKDANEV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYN4 Toprim domain-containing protein

5.0e-146

67.91

Show/hide

Query:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGI
        MPINSTFTFNSNFNF FKFI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPP                      VK L E+MDL+GI
Subjt:  MPINSTFTFNSNFNFNFKFI-HRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGI

Query:  VCDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPV
        VCDEHCIPGKYYCLFCPK    RL  +  S +    G+  +  C   +  W   IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDE           
Subjt:  VCDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPV

Query:  MSFLGAGLISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL
               LISYFSMRMISQETLERNVVMQ+ GRQV IAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                 
Subjt:  MSFLGAGLISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL

Query:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
         VEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIE                        KD+AYQYLW CKDYLDKVSR+ILATDSDVPGQALAEE
Subjt:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE

Query:  LARRLGKHRCWRVDWPYKDGFNRFKDANEV
        LARRLGK+RCWRV WPYKDGFNRFKDANEV
Subjt:  LARRLGKHRCWRVDWPYKDGFNRFKDANEV

A0A1S3BDI8 primase homolog protein isoform X2

8.5e-162

73.89

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPP                      VKVLREKMDLIGIV
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV

Query:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM
        CDEHCIPGKYYCLFCPK    RL  +  S +    G+  +  C   +  W   IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDE            
Subjt:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM

Query:  SFLGAGLISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPLK
              LISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                  
Subjt:  SFLGAGLISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPLK

Query:  VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEEL
        VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIE                        KDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEEL
Subjt:  VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEEL

Query:  ARRLGKHRCWRVDWPYKDGFNRFKDANEV
        ARRLGKHRCWRVDWPYKDGFNRFKDANEV
Subjt:  ARRLGKHRCWRVDWPYKDGFNRFKDANEV

A0A1S4DT27 primase homolog protein isoform X4

6.1e-160

73.66

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPP                      VKVLREKMDLIGIV
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV

Query:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM
        CDEHCIPGKYYCLFCPK    RL  +  S +    G+  +  C   +  W   IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDE            
Subjt:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM

Query:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL
              LISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                 
Subjt:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL

Query:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
         VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIE                        KDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
Subjt:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE

Query:  LARRLGKHRCWRVDWPYKDGFNRFKDANE
        LARRLGKHRCWRVDWPYKDGFNRFKDANE
Subjt:  LARRLGKHRCWRVDWPYKDGFNRFKDANE

A0A1S4DT34 primase homolog protein isoform X3

2.7e-147

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPP                      VKVLREKMDLIGIV
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV

Query:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM
        CDEHCIPGKYYCLFCPK    RL  +  S +    G+  +  C   +  W   IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDE            
Subjt:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM

Query:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL
              LISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                 
Subjt:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL

Query:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
         VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIE                                        KVSRIILATDSDVPGQALAEE
Subjt:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE

Query:  LARRLGKHRCWRVDWPYKDGFNRFKDANEV
        LARRLGKHRCWRVDWPYKDGFNRFKDANEV
Subjt:  LARRLGKHRCWRVDWPYKDGFNRFKDANEV

A0A1S4DTX2 primase homolog protein isoform X1

2.1e-160

73.72

Show/hide

Query:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV
        MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPP                      VKVLREKMDLIGIV
Subjt:  MPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDFEVNVLGYPKVKVLREKMDLIGIV

Query:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM
        CDEHCIPGKYYCLFCPK    RL  +  S +    G+  +  C   +  W   IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDE            
Subjt:  CDEHCIPGKYYCLFCPKIY-SRLTVQGWSFN----GEELISSC---DSNW---IFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPPVM

Query:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL
              LISYFSMRMISQETLERNVVMQVVGR QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELII                 
Subjt:  SFLGAGLISYFSMRMISQETLERNVVMQVVGR-QVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPL

Query:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
         VEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIE                        KDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE
Subjt:  KVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEE

Query:  LARRLGKHRCWRVDWPYKDGFNRFKDANEV
        LARRLGKHRCWRVDWPYKDGFNRFKDANEV
Subjt:  LARRLGKHRCWRVDWPYKDGFNRFKDANEV

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

1.1e-60

40.91

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Query:  KVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKIYSRLTVQGWSFNGEELIS------SCDSNW------------IFADGRLAFNGFSKTEKMVGRSSKE
        ++  LR K+   G+   E+C PG++  L CP      T +G + +GE+ +S         + W            + ADG LA       EK+  + + E
Subjt:  KVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKIYSRLTVQGWSFNGEELIS------SCDSNW------------IFADGRLAFNGFSKTEKMVGRSSKE

Query:  SLVLEPLCDEMFFYMVRAPPVMSFLGAGLISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDA
         + LEPLCDE                  +  YF+ R IS++TLERN VMQ  +G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI   
Subjt:  SLVLEPLCDEMFFYMVRAPPVMSFLGAGLISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDA

Query:  DELIIVIHLLSSTFRNILYIPLKVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYL
         E+II                  VEGE+DKL++EEAGFLNC+SVP GAP+KVS+  IP                           KD+ Y++LW C DYL
Subjt:  DELIIVIHLLSSTFRNILYIPLKVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYL

Query:  DKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEV
         K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K     FKDANEV
Subjt:  DKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEV

F4I6E6 Primase homolog protein

1.4e-57

40.29

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Query:  KVKVLREKMDLIGIVCDEHCIPGKYYCLFCPK--------------IYSRLTVQGWSFNGEELISSCDSNWIF-ADGRL-AFNGFSKTEKMVGRSSKESL
        K+  L  K+   GI   ++C PG   CL CPK              IY   +   W+         C    +   DG+L + +   K E+ +   + ES+
Subjt:  KVKVLREKMDLIGIVCDEHCIPGKYYCLFCPK--------------IYSRLTVQGWSFNGEELISSCDSNWIF-ADGRL-AFNGFSKTEKMVGRSSKESL

Query:  VLEPLCDEMFFYMVRAPPVMSFLGAGLISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADE
         LEPLCDE                  +  +F+ R IS +TLERN VMQ  +  ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E
Subjt:  VLEPLCDEMFFYMVRAPPVMSFLGAGLISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADE

Query:  LIIVIHLLSSTFRNILYIPLKVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDK
        +II                  VEGE DKL++EEAGF NC+SVP GAP  VS+  IP                           KD+A++Y+W C DYL K
Subjt:  LIIVIHLLSSTFRNILYIPLKVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDK

Query:  VSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEV
         SRI++ATD D PGQALAEELARRLGK RCW V WP K     FKDANEV
Subjt:  VSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEV

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

1.0e-58

40.29

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Query:  KVKVLREKMDLIGIVCDEHCIPGKYYCLFCPK--------------IYSRLTVQGWSFNGEELISSCDSNWIF-ADGRL-AFNGFSKTEKMVGRSSKESL
        K+  L  K+   GI   ++C PG   CL CPK              IY   +   W+         C    +   DG+L + +   K E+ +   + ES+
Subjt:  KVKVLREKMDLIGIVCDEHCIPGKYYCLFCPK--------------IYSRLTVQGWSFNGEELISSCDSNWIF-ADGRL-AFNGFSKTEKMVGRSSKESL

Query:  VLEPLCDEMFFYMVRAPPVMSFLGAGLISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADE
         LEPLCDE                  +  +F+ R IS +TLERN VMQ  +  ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E
Subjt:  VLEPLCDEMFFYMVRAPPVMSFLGAGLISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADE

Query:  LIIVIHLLSSTFRNILYIPLKVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDK
        +II                  VEGE DKL++EEAGF NC+SVP GAP  VS+  IP                           KD+A++Y+W C DYL K
Subjt:  LIIVIHLLSSTFRNILYIPLKVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDK

Query:  VSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEV
         SRI++ATD D PGQALAEELARRLGK RCW V WP K     FKDANEV
Subjt:  VSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEV

AT1G30680.1 toprim domain-containing protein

7.6e-62

40.91

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Query:  KVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKIYSRLTVQGWSFNGEELIS------SCDSNW------------IFADGRLAFNGFSKTEKMVGRSSKE
        ++  LR K+   G+   E+C PG++  L CP      T +G + +GE+ +S         + W            + ADG LA       EK+  + + E
Subjt:  KVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKIYSRLTVQGWSFNGEELIS------SCDSNW------------IFADGRLAFNGFSKTEKMVGRSSKE

Query:  SLVLEPLCDEMFFYMVRAPPVMSFLGAGLISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDA
         + LEPLCDE                  +  YF+ R IS++TLERN VMQ  +G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI   
Subjt:  SLVLEPLCDEMFFYMVRAPPVMSFLGAGLISYFSMRMISQETLERNVVMQV-VGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDA

Query:  DELIIVIHLLSSTFRNILYIPLKVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYL
         E+II                  VEGE+DKL++EEAGFLNC+SVP GAP+KVS+  IP                           KD+ Y++LW C DYL
Subjt:  DELIIVIHLLSSTFRNILYIPLKVEGEMDKLSVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYL

Query:  DKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEV
         K SRI++ATD D PGQA+AEE+ARRLGK RCWRV WP K     FKDANEV
Subjt:  DKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKDGFNRFKDANEV

Sequences

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CDS sequence

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AAAGAAAACCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGCAGATAAGGCCTCTTCCACTCTGCTCTTCCATTTCTCTCCAAATCCATTCAATTCAAATGCCAATAAA
CTCAACTTTCACCTTCAATTCCAATTTCAACTTCAACTTCAAATTCATTCATCGCTCTTCCCCTTCCTCTCTTTCTCTAAACAATTTCTCCATTTCCTCTTCCCCTTCCC
GATTCCTTCTTCGCTTCTGCACTACCAGACTATCTTCCGCCCTTTCTCATGCTCCACCGTTGCCGCCGCCAGAAAATGAAACCCCACCCTTTTGTTTGTTTTCGGATTTT
GAGGTTAACGTTTTGGGCTACCCTAAAGTGAAGGTTCTTAGGGAGAAGATGGATCTTATTGGAATCGTTTGTGATGAACATTGTATCCCTGGAAAGTACTATTGCCTCTT
CTGTCCCAAGATATATTCTCGATTGACAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTGATTCCAACTGGATATTTGCAGATGGCAGATTGGCAT
TTAATGGATTCAGCAAAACTGAAAAAATGGTTGGACGGAGTTCAAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGATGTTCTTCTACATGGTTAGAGCCCCTCCT
GTGATGTCGTTTTTGGGAGCTGGGCTAATCTCTTATTTCAGCATGAGAATGATATCCCAAGAAACCTTAGAACGGAATGTTGTTATGCAAGTAGTTGGTCGTCAGGTTGC
TATTGCATTTACTTATCGTCAAAATGGACAGCTTGTCGGTTGCAAGTATCGAACCATGGACAAGAGATTTTGGCAGGAGAAGGGTACAGCAAAGTTCCTGTATGGGATTG
ATGACATTAATGATGCAGATGAACTCATCATTGTAATCCACCTTTTGTCATCCACTTTTCGTAATATTCTGTATATACCGTTGAAGGTTGAAGGTGAAATGGATAAACTT
TCAGTTGAAGAAGCTGGTTTCCTGAATTGTATCAGTGTTCCTGGTGGTGCCCCAAGCAAGGTTTCAACTGATACAATTCCACCAATTGAAAAGAGAGAAGCAGTGAAGCA
CAATTTTGAAAAACCAGATACTTTACGGATGGATTTTTGGAAACATCCACAAAAGGATTCTGCATACCAATATTTATGGGGCTGCAAAGACTACTTAGATAAGGTTTCCC
GCATTATCTTGGCCACTGATAGCGATGTACCAGGGCAAGCTTTGGCAGAAGAGCTAGCACGTCGTCTTGGAAAACACAGATGTTGGCGAGTAGATTGGCCATATAAAGAT
GGCTTCAACCGTTTTAAGGATGCCAATGAGGTTACCTTCCTCCTTTCAATAGTTATTCATAAAGTTTTTGCACCTCTAAAAGTTGCTAGTGAATTGTATAATAGGAATGA
ATGA

mRNA sequence

Show/hide mRNA sequence

ACAAAGAAAACCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAGCAGATAAGGCCTCTTCCACTCTGCTCTTCCATTTCTCTCCAAATCCATTCAATTCAAATGCCAATA
AACTCAACTTTCACCTTCAATTCCAATTTCAACTTCAACTTCAAATTCATTCATCGCTCTTCCCCTTCCTCTCTTTCTCTAAACAATTTCTCCATTTCCTCTTCCCCTTC
CCGATTCCTTCTTCGCTTCTGCACTACCAGACTATCTTCCGCCCTTTCTCATGCTCCACCGTTGCCGCCGCCAGAAAATGAAACCCCACCCTTTTGTTTGTTTTCGGATT
TTGAGGTTAACGTTTTGGGCTACCCTAAAGTGAAGGTTCTTAGGGAGAAGATGGATCTTATTGGAATCGTTTGTGATGAACATTGTATCCCTGGAAAGTACTATTGCCTC
TTCTGTCCCAAGATATATTCTCGATTGACAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTGATTCCAACTGGATATTTGCAGATGGCAGATTGGC
ATTTAATGGATTCAGCAAAACTGAAAAAATGGTTGGACGGAGTTCAAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGATGTTCTTCTACATGGTTAGAGCCCCTC
CTGTGATGTCGTTTTTGGGAGCTGGGCTAATCTCTTATTTCAGCATGAGAATGATATCCCAAGAAACCTTAGAACGGAATGTTGTTATGCAAGTAGTTGGTCGTCAGGTT
GCTATTGCATTTACTTATCGTCAAAATGGACAGCTTGTCGGTTGCAAGTATCGAACCATGGACAAGAGATTTTGGCAGGAGAAGGGTACAGCAAAGTTCCTGTATGGGAT
TGATGACATTAATGATGCAGATGAACTCATCATTGTAATCCACCTTTTGTCATCCACTTTTCGTAATATTCTGTATATACCGTTGAAGGTTGAAGGTGAAATGGATAAAC
TTTCAGTTGAAGAAGCTGGTTTCCTGAATTGTATCAGTGTTCCTGGTGGTGCCCCAAGCAAGGTTTCAACTGATACAATTCCACCAATTGAAAAGAGAGAAGCAGTGAAG
CACAATTTTGAAAAACCAGATACTTTACGGATGGATTTTTGGAAACATCCACAAAAGGATTCTGCATACCAATATTTATGGGGCTGCAAAGACTACTTAGATAAGGTTTC
CCGCATTATCTTGGCCACTGATAGCGATGTACCAGGGCAAGCTTTGGCAGAAGAGCTAGCACGTCGTCTTGGAAAACACAGATGTTGGCGAGTAGATTGGCCATATAAAG
ATGGCTTCAACCGTTTTAAGGATGCCAATGAGGTTACCTTCCTCCTTTCAATAGTTATTCATAAAGTTTTTGCACCTCTAAAAGTTGCTAGTGAATTGTATAATAGGAAT
GAATGA

Protein sequence

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KENLVCVCVCVCVKQIRPLPLCSSISLQIHSIQMPINSTFTFNSNFNFNFKFIHRSSPSSLSLNNFSISSSPSRFLLRFCTTRLSSALSHAPPLPPPENETPPFCLFSDF
EVNVLGYPKVKVLREKMDLIGIVCDEHCIPGKYYCLFCPKIYSRLTVQGWSFNGEELISSCDSNWIFADGRLAFNGFSKTEKMVGRSSKESLVLEPLCDEMFFYMVRAPP
VMSFLGAGLISYFSMRMISQETLERNVVMQVVGRQVAIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVIHLLSSTFRNILYIPLKVEGEMDKL
SVEEAGFLNCISVPGGAPSKVSTDTIPPIEKREAVKHNFEKPDTLRMDFWKHPQKDSAYQYLWGCKDYLDKVSRIILATDSDVPGQALAEELARRLGKHRCWRVDWPYKD
GFNRFKDANEVTFLLSIVIHKVFAPLKVASELYNRNE

MELO3C035679 (gene) of Melon (DHL92) v4 genome