; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000016 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000016
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTFIIS N-terminal domain-containing protein
Genome locationscaffold946_1:67028..67869
RNA-Seq ExpressionMS000016
SyntenyMS000016
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR003617 - Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR017923 - Transcription factor IIS, N-terminal
IPR035441 - TFIIS/LEDGF domain superfamily
IPR044805 - Mediator of RNA polymerase II transcription subunit 26a/b-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004136624.1 probable mediator of RNA polymerase II transcription subunit 26b [Cucumis sativus]7.0e-9186.47Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        AA S SLD WRNYFRNANSDIF IIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAV GD+DGDDGE GFKSDF  D C EFEAGGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESK YSSRDD GEMN N+VSN+S+GEAEALTDEIEQES+I GE+LRIKEILNNFE+ESD +LFESLRRLELM+LSVDTLQATEIGK VN LRKHGSK IR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        +LARVLI
Subjt:  NLARVLI

XP_008443218.1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cucumis melo]4.9e-9287.44Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        AA S SLD WRNYFRNANSDIF IIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAV GD+DGDDGE GFKSDFA D C EFEAGGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESK YSSRDD GEMN N+VSN+S+GEAEALTDEIEQES+I GE+LRIKEILNNFE+ESDS+LFESLRRLELM+LSVDTLQATEIGK VN LRKHGSK IR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        +LARVLI
Subjt:  NLARVLI

XP_022152040.1 probable mediator of RNA polymerase II transcription subunit 26b [Momordica charantia]5.4e-10799.52Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        AA SASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        NLARVLI
Subjt:  NLARVLI

XP_038904902.1 probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Benincasa hispida]2.0e-9388.41Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        AA S SLD WRNYFRNANSDIF IIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAV GD+DGDDGE GFKSDFA D C EFEAGGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESK YSSRDD GEMN N+VSN+S+GEAEALTDEIEQES+I GE+LRIKEILNNFEEESDS+LFESLRRLELM+LSVDTLQATEIGK VNGLRKHGSK IR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        +LARVLI
Subjt:  NLARVLI

XP_038904903.1 probable mediator of RNA polymerase II transcription subunit 26b isoform X2 [Benincasa hispida]2.0e-9388.41Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        AA S SLD WRNYFRNANSDIF IIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAV GD+DGDDGE GFKSDFA D C EFEAGGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESK YSSRDD GEMN N+VSN+S+GEAEALTDEIEQES+I GE+LRIKEILNNFEEESDS+LFESLRRLELM+LSVDTLQATEIGK VNGLRKHGSK IR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        +LARVLI
Subjt:  NLARVLI

TrEMBL top hitse value%identityAlignment
A0A0A0LBK9 TFIIS N-terminal domain-containing protein3.4e-9186.47Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        AA S SLD WRNYFRNANSDIF IIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAV GD+DGDDGE GFKSDF  D C EFEAGGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESK YSSRDD GEMN N+VSN+S+GEAEALTDEIEQES+I GE+LRIKEILNNFE+ESD +LFESLRRLELM+LSVDTLQATEIGK VN LRKHGSK IR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        +LARVLI
Subjt:  NLARVLI

A0A1S3B7K4 probable mediator of RNA polymerase II transcription subunit 26b2.4e-9287.44Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        AA S SLD WRNYFRNANSDIF IIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAV GD+DGDDGE GFKSDFA D C EFEAGGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESK YSSRDD GEMN N+VSN+S+GEAEALTDEIEQES+I GE+LRIKEILNNFE+ESDS+LFESLRRLELM+LSVDTLQATEIGK VN LRKHGSK IR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        +LARVLI
Subjt:  NLARVLI

A0A5A7UDQ2 Putative mediator of RNA polymerase II transcription subunit 26b2.4e-9287.44Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        AA S SLD WRNYFRNANSDIF IIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAV GD+DGDDGE GFKSDFA D C EFEAGGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESK YSSRDD GEMN N+VSN+S+GEAEALTDEIEQES+I GE+LRIKEILNNFE+ESDS+LFESLRRLELM+LSVDTLQATEIGK VN LRKHGSK IR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        +LARVLI
Subjt:  NLARVLI

A0A6J1DCU0 probable mediator of RNA polymerase II transcription subunit 26b2.6e-10799.52Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        AA SASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        NLARVLI
Subjt:  NLARVLI

A0A6J1FCK1 probable mediator of RNA polymerase II transcription subunit 26b3.0e-8785.02Show/hide
Query:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        +A S SLDYWR+YFRNANSDIFS+IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAV GDV   DGE GFKSD A D    FE GGSK
Subjt:  AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        ESK YSSRDD GEMN NQVSNYS+GEAEALTDEIEQESEI GE+LRIKEILNNFEEESDS+LFESLRRLELM+LSVD LQATEIGK VNGLRKHGSK IR
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
        +L R LI
Subjt:  NLARVLI

SwissProt top hitse value%identityAlignment
F4J4Y5 Probable mediator of RNA polymerase II transcription subunit 26a7.2e-3845.32Show/hide
Query:  SASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKESK
        S SLD WR YFR  +SDIF IID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD +EL++ GD              AA        GG +   
Subjt:  SASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKESK

Query:  AYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNLA
                             G++   T E E+ S    E++RI++IL+N ++E DS+L ESLR+LE MS+SVD L+ TEIGK VNGLR+H S  I  LA
Subjt:  AYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNLA

Query:  RVL
        + L
Subjt:  RVL

F4KFC7 Probable mediator of RNA polymerase II transcription subunit 26c5.2e-1231.4Show/hide
Query:  LDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-----RVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        LD +R+   NA  D+++ ID AILVA+ D  +E + RRD I E+L++  +  +C  CD      V  A  G V+               R  E      +
Subjt:  LDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-----RVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        E    ++ ++  E ++N   +  +     L D+ EQ+S     I+ IKE L +  + S+  L E L+ LE M ++   LQ T+IG+ VN +RKH S  +R
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
         LA+ L+
Subjt:  NLARVLI

Q9FHK9 Probable mediator of RNA polymerase II transcription subunit 26b3.2e-5458.05Show/hide
Query:  SASLDYWRNYF-RNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKES
        S SLD WR YF R  +SDIF IID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GCD +EL+VPGD + + G  G      A   +   AGGSKES
Subjt:  SASLDYWRNYF-RNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKES

Query:  KAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNL
        KA SSR D  ++    VSNY++ EAEAL+DEIE+ S ++ E+ RIKEIL N E+E +S+L +SLR L+LMSL+VD L++TEIGK VNGLRKH S  IR L
Subjt:  KAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNL

Query:  ARVLI
        A+ LI
Subjt:  ARVLI

Arabidopsis top hitse value%identityAlignment
AT3G10820.1 Transcription elongation factor (TFIIS) family protein5.1e-3945.32Show/hide
Query:  SASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKESK
        S SLD WR YFR  +SDIF IID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD +EL++ GD              AA        GG +   
Subjt:  SASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKESK

Query:  AYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNLA
                             G++   T E E+ S    E++RI++IL+N ++E DS+L ESLR+LE MS+SVD L+ TEIGK VNGLR+H S  I  LA
Subjt:  AYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNLA

Query:  RVL
        + L
Subjt:  RVL

AT3G10820.2 Transcription elongation factor (TFIIS) family protein5.1e-3945.32Show/hide
Query:  SASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKESK
        S SLD WR YFR  +SDIF IID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD +EL++ GD              AA        GG +   
Subjt:  SASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKESK

Query:  AYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNLA
                             G++   T E E+ S    E++RI++IL+N ++E DS+L ESLR+LE MS+SVD L+ TEIGK VNGLR+H S  I  LA
Subjt:  AYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNLA

Query:  RVL
        + L
Subjt:  RVL

AT5G05140.1 Transcription elongation factor (TFIIS) family protein2.3e-5558.05Show/hide
Query:  SASLDYWRNYF-RNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKES
        S SLD WR YF R  +SDIF IID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GCD +EL+VPGD + + G  G      A   +   AGGSKES
Subjt:  SASLDYWRNYF-RNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKES

Query:  KAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNL
        KA SSR D  ++    VSNY++ EAEAL+DEIE+ S ++ E+ RIKEIL N E+E +S+L +SLR L+LMSL+VD L++TEIGK VNGLRKH S  IR L
Subjt:  KAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNL

Query:  ARVLI
        A+ LI
Subjt:  ARVLI

AT5G09850.1 Transcription elongation factor (TFIIS) family protein3.7e-1331.4Show/hide
Query:  LDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-----RVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK
        LD +R+   NA  D+++ ID AILVA+ D  +E + RRD I E+L++  +  +C  CD      V  A  G V+               R  E      +
Subjt:  LDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCD-----RVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSK

Query:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR
        E    ++ ++  E ++N   +  +     L D+ EQ+S     I+ IKE L +  + S+  L E L+ LE M ++   LQ T+IG+ VN +RKH S  +R
Subjt:  ESKAYSSRDDQGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIR

Query:  NLARVLI
         LA+ L+
Subjt:  NLARVLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCCGCCATGTCCGCGTCTCTCGATTACTGGAGGAATTACTTTAGGAATGCGAATTCGGATATCTTTAGCATAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGCCC
TAAGGAGTTCAGATTGAGGAGAGATCGAATTGCTGAGCAGTTGTTCTCCTGCAGATTGACTCGCTGTTTGGGCTGCGACCGAGTGGAGCTGGCGGTGCCCGGCGACGTTG
ACGGTGACGACGGAGAAAGGGGTTTCAAGAGCGATTTTGCCGCAGATCGGTGCGAGGAGTTCGAGGCTGGTGGGAGCAAAGAGAGCAAGGCTTATAGCAGTAGAGATGAT
CAAGGGGAGATGAATTTGAACCAGGTTAGCAACTACAGCTACGGTGAAGCTGAAGCATTGACTGATGAAATTGAGCAAGAATCTGAGATTGCTGGGGAGATTTTGAGGAT
CAAAGAGATTCTGAATAATTTTGAAGAGGAGTCTGATTCCATATTGTTTGAATCACTGAGAAGACTGGAATTGATGTCTCTATCAGTTGACACTCTGCAGGCAACTGAGA
TTGGCAAGGTTGTTAATGGTCTTCGAAAGCATGGATCGAAGGGCATCCGCAATCTTGCTCGAGTTCTTATC
mRNA sequenceShow/hide mRNA sequence
GCCGCCATGTCCGCGTCTCTCGATTACTGGAGGAATTACTTTAGGAATGCGAATTCGGATATCTTTAGCATAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGCCC
TAAGGAGTTCAGATTGAGGAGAGATCGAATTGCTGAGCAGTTGTTCTCCTGCAGATTGACTCGCTGTTTGGGCTGCGACCGAGTGGAGCTGGCGGTGCCCGGCGACGTTG
ACGGTGACGACGGAGAAAGGGGTTTCAAGAGCGATTTTGCCGCAGATCGGTGCGAGGAGTTCGAGGCTGGTGGGAGCAAAGAGAGCAAGGCTTATAGCAGTAGAGATGAT
CAAGGGGAGATGAATTTGAACCAGGTTAGCAACTACAGCTACGGTGAAGCTGAAGCATTGACTGATGAAATTGAGCAAGAATCTGAGATTGCTGGGGAGATTTTGAGGAT
CAAAGAGATTCTGAATAATTTTGAAGAGGAGTCTGATTCCATATTGTTTGAATCACTGAGAAGACTGGAATTGATGTCTCTATCAGTTGACACTCTGCAGGCAACTGAGA
TTGGCAAGGTTGTTAATGGTCTTCGAAAGCATGGATCGAAGGGCATCCGCAATCTTGCTCGAGTTCTTATC
Protein sequenceShow/hide protein sequence
AAMSASLDYWRNYFRNANSDIFSIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVPGDVDGDDGERGFKSDFAADRCEEFEAGGSKESKAYSSRDD
QGEMNLNQVSNYSYGEAEALTDEIEQESEIAGEILRIKEILNNFEEESDSILFESLRRLELMSLSVDTLQATEIGKVVNGLRKHGSKGIRNLARVLI