; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000138 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000138
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold603:10519..10849
RNA-Seq ExpressionMS000138
SyntenyMS000138
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]1.2e-3665.45Show/hide
Query:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        QAIPNY +SCF+ P+ LC EI+SL A+FWWG     KKIHW SWK+LC+SKE GG+GFK + IFNQAMLAKQSW+I+KN  SL+ ++LRGKYF HGNFM 
Subjt:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCYV
        A+LG  P +V
Subjt:  AKLGRTPCYV
XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]4.9e-3563.3Show/hide
Query:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        QAIPNY +SCFKLP+ +CNE+  +  +FWWG  S  +KIHW SWK LC+ K+LGGMGF+ +SIFNQAMLAKQSWRI+++ +SL+A+ LRGKYF  G+F+Q
Subjt:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCY
        AKLG  P Y
Subjt:  AKLGRTPCY
XP_023881891.1 uncharacterized protein LOC111994244 [Quercus suber]4.0e-2955.05Show/hide
Query:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSLK-KIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        QAIP Y +SCF++P  LC EI+++  +FWWGQ+  + KI W SWKKLC +K+ GGMGF+ +  FN AMLAKQ WR++ N  SLVAQI + +Y+ HG+  Q
Subjt:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSLK-KIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCY
        AKLG +P Y
Subjt:  AKLGRTPCY
XP_030479388.1 uncharacterized protein LOC115696635 [Cannabis sativa]4.0e-2955.96Show/hide
Query:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQ-KSLKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        QAIP Y ++CF+LP+KLC  I+++ A+FWWG   +  KIHW SWK LC SK LGG+GF+ +  FNQAMLAKQ+WRI+KN  SL+AQ+L  +YF   +F+Q
Subjt:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQ-KSLKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCY
        AK G  P +
Subjt:  AKLGRTPCY
XP_040998224.1 uncharacterized protein LOC121244278 [Juglans microcarpa x Juglans regia]1.1e-2957.27Show/hide
Query:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQK-SLKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        QAIP+Y +  FKLP+ LC E++SL +KFWWG K + KKIHW SW++L + K  GGMGF+ V  FN AMLAKQ WR++KN  SLVAQ+ R KYF +  F++
Subjt:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQK-SLKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCYV
        AKLG  P Y+
Subjt:  AKLGRTPCYV
TrEMBL top hitse value%identityAlignment
A0A2N9EV00 Uncharacterized protein3.3e-2952.73Show/hide
Query:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        Q IPNY +SCF+LP  LC++I++L AKFWWGQ S  +K+HW +W +LC +KE GG+GF+  + FN A+LAKQ WR +KNQ SLV ++ + +YF   +FMQ
Subjt:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCYV
        AK+G  P ++
Subjt:  AKLGRTPCYV
A0A2N9HTH6 Reverse transcriptase domain-containing protein1.1e-2953.21Show/hide
Query:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        Q+IP Y +SCFKLP  LCNE++S+ + FWWG K+  + +HW  W+KLC+SKE GG+GF+ +  FN A+LAKQ WRI++  +SLVA++ + KYF   NFM 
Subjt:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCY
        A LG  P Y
Subjt:  AKLGRTPCY
A0A6J1CV63 uncharacterized protein LOC1110146625.7e-3765.45Show/hide
Query:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        QAIPNY +SCF+ P+ LC EI+SL A+FWWG     KKIHW SWK+LC+SKE GG+GFK + IFNQAMLAKQSW+I+KN  SL+ ++LRGKYF HGNFM 
Subjt:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCYV
        A+LG  P +V
Subjt:  AKLGRTPCYV
A0A6J1DRA0 uncharacterized protein LOC1110224232.4e-3563.3Show/hide
Query:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        QAIPNY +SCFKLP+ +CNE+  +  +FWWG  S  +KIHW SWK LC+ K+LGGMGF+ +SIFNQAMLAKQSWRI+++ +SL+A+ LRGKYF  G+F+Q
Subjt:  QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSL-KKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCY
        AKLG  P Y
Subjt:  AKLGRTPCY
A0A6P9ECM1 uncharacterized mitochondrial protein AtMg00310-like3.3e-2953.7Show/hide
Query:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQ-KSLKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQA
        AIP+Y +SCFKLP +LC+ I+S+ A++WWGQ +  +KIHW SWKK+C SK +GGMGFK++ +FN A+L KQ+WR+++NQ+SL  +I   +YF  GN + A
Subjt:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQ-KSLKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQA

Query:  KLGRTPCY
         LG  P Y
Subjt:  KLGRTPCY
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.1e-1033.33Show/hide
Query:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKS-LKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFV
        ++P + +S   LP  + N +D L   F WG  +  KK H   W K+C  K+ GG+G +     N+A+++K  WR+++ + SL   +L+ KY V
Subjt:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKS-LKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFV
P93295 Uncharacterized mitochondrial protein AtMg003101.0e-2244.04Show/hide
Query:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQ-KSLKKIHWTSWKKLCLSKE-LGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        A+P Y +SCF+L   LC ++ S   +FWW   ++ +KI W +W+KLC SKE  GG+GF+ +  FNQA+LAKQS+RI+    +L++++LR +YF H + M+
Subjt:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQ-KSLKKIHWTSWKKLCLSKE-LGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCY
          +G  P Y
Subjt:  AKLGRTPCY
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein3.9e-2241.28Show/hide
Query:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQK-SLKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQA
        A+P Y ++CF LP  +C +I S+ A FWW  K   K +HW +W  L   K  GG+GFK +  FN A+L KQ WR++   ESL+A++ + +YF   + + A
Subjt:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQK-SLKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQA

Query:  KLGRTPCYV
         LG  P +V
Subjt:  KLGRTPCYV
ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.1e-2444.04Show/hide
Query:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQ-KSLKKIHWTSWKKLCLSKE-LGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ
        A+P Y +SCF+L   LC ++ S   +FWW   ++ +KI W +W+KLC SKE  GG+GF+ +  FNQA+LAKQS+RI+    +L++++LR +YF H + M+
Subjt:  AIPNYPISCFKLPLKLCNEIDSLCAKFWWGQ-KSLKKIHWTSWKKLCLSKE-LGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQ

Query:  AKLGRTPCY
          +G  P Y
Subjt:  AKLGRTPCY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAGCTATTCCCAACTACCCCATAAGCTGTTTTAAGCTTCCTTTAAAGTTGTGTAACGAGATTGACTCACTTTGTGCTAAATTTTGGTGGGGACAGAAAAGTCTGAAGAA
AATTCATTGGACAAGTTGGAAGAAGTTATGTTTGAGTAAGGAGCTTGGTGGCATGGGTTTTAAACAAGTTAGTATATTTAACCAAGCTATGTTGGCTAAGCAAAGTTGGA
GAATTATGAAAAACCAAGAGAGTCTGGTTGCTCAAATTCTGAGAGGGAAGTACTTTGTTCATGGGAATTTTATGCAAGCAAAGCTGGGAAGAACTCCCTGTTATGTC
mRNA sequenceShow/hide mRNA sequence
CAAGCTATTCCCAACTACCCCATAAGCTGTTTTAAGCTTCCTTTAAAGTTGTGTAACGAGATTGACTCACTTTGTGCTAAATTTTGGTGGGGACAGAAAAGTCTGAAGAA
AATTCATTGGACAAGTTGGAAGAAGTTATGTTTGAGTAAGGAGCTTGGTGGCATGGGTTTTAAACAAGTTAGTATATTTAACCAAGCTATGTTGGCTAAGCAAAGTTGGA
GAATTATGAAAAACCAAGAGAGTCTGGTTGCTCAAATTCTGAGAGGGAAGTACTTTGTTCATGGGAATTTTATGCAAGCAAAGCTGGGAAGAACTCCCTGTTATGTC
Protein sequenceShow/hide protein sequence
QAIPNYPISCFKLPLKLCNEIDSLCAKFWWGQKSLKKIHWTSWKKLCLSKELGGMGFKQVSIFNQAMLAKQSWRIMKNQESLVAQILRGKYFVHGNFMQAKLGRTPCYV