; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000208 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000208
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold251:340096..340674
RNA-Seq ExpressionMS000208
SyntenyMS000208
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]4.2e-4547.42Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDI-EAITNLIPTRITPEINVWLLAPYN
        E++WKQR R DWLK GD NTK+FH KA+ R+  N I  +E+  G   ++ E IE  F  +FQ +FTSS+PS + I EA+  L+P +++ E+N  L  P+ 
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDI-EAITNLIPTRITPEINVWLLAPYN

Query:  QEEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
         E+I  A+ +M PTK PGPDG P  F+Q +  +VG    + CL++LN  G + + N T+IALIPKV++P  V +FRPISLCNV Y+I++K+I N
Subjt:  QEEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]3.9e-5158.03Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ
        EIFWKQR REDWLKWG                                         +A   ++         DIEAI NLIPTRIT E+N  LLAPY +
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ

Query:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
        EEIE AI+QMFPTK  GPDGFP LFYQTY HVVGPKT+EACLN LNN  DI+ WN+TYIALIPK+KQP S+ DFRPISLCNVSYKIISKSITN
Subjt:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

XP_024038343.1 uncharacterized protein LOC112097373 [Citrus clementina]8.7e-4348.19Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ
        EI+WKQR R DWLK GD NTK+FH KA+ RK  N I  IEN  G   E  E +E  F  YF ++FT+S P+   I A  + I  R++ E+N  L  P+  
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ

Query:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
        EE+  A+ QM PTK PGPDG P +F+Q +   V    +  CL++LN  GD+  +N TYI LI K  +P  V DFRPISLCNV Y+I++K+I N
Subjt:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]1.6e-4447.15Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ
        ++F KQR R DWL+ GD NTK+FH KA+ RK  N +  IEN  G   +E +EIE    ++FQ +FT+SSP+ S I+A    +  ++TPE+NV L  P+  
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ

Query:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
        E++E A+  M PTK PGPDG P  F+Q +   V    +  CLNVLN  G+    N T+IALIPK+  P  V D+RPISLCNV Y++++K+I N
Subjt:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

XP_042952177.1 uncharacterized protein LOC122289261 [Carya illinoinensis]6.6e-4346.84Show/hide
Query:  WKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQEEI
        WKQR ++ WLK GD N+ +FHK A  R+  NSI  +   +G  T ++ EI + F  YFQ +F+S+SP+S D+    N +  R+  E+N  L   +  EE+
Subjt:  WKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQEEI

Query:  ENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
        ++A+ QM P   PGPDGFP LFYQ++  VVG +  +A L++LN +G+I + N TYI LIPKVK P +V DF+PISLCNV YK++SK+++N
Subjt:  ENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

TrEMBL top hitse value%identityAlignment
A0A2N9FN47 Uncharacterized protein9.4e-4348.19Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ
        EIFWKQR R  WL  GD NT++FH+ A+ RK  N++H + + N     + + IE+  V YF ++F+SS+P++  I  +T L+  R+TPE+N  LL+P++ 
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ

Query:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
        EEI++A+ QM P+K PGPDG   LF+Q Y +VVG    EA L+ LN+   + + N T I LIPKVK P ++  FRPISLCNV YKIISK + N
Subjt:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

A0A2N9GPZ7 Reverse transcriptase domain-containing protein2.1e-4246.11Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ
        EIFW+QR R  W+  GD NTK+FH +   R+  N I  + +++G    E  +I    V YFQ IFTSS+PS+  I  +   + + +T  +N  L A + +
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ

Query:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
        +E+  A+KQM+PTK PGPDG   +FYQTY  +VGP+  +A L++L++   +R  N T+IALIPKVK P ++ DFRPISLCNV YKI+SK + N
Subjt:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

A0A2N9GWG4 Uncharacterized protein9.4e-4348.19Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ
        EIFWKQR R  WL  GD NT++FH+ A+ RK  N++H + + N     + + IE+  V YF ++F+SS+P++  I  +T L+  R+TPE+N  LL+P++ 
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ

Query:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
        EEI++A+ QM P+K PGPDG   LF+Q Y +VVG    EA L+ LN+   + + N T I LIPKVK P ++  FRPISLCNV YKIISK + N
Subjt:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

A0A2N9I335 Reverse transcriptase domain-containing protein1.6e-4245.6Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ
        EI+W+QR R  W++ GD NTK+FH     R+  N I  + +  G    +  ++ N  V YFQSIF+SS+P    I +  + +   +T E+N  LL  +N 
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ

Query:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
        EE+  A+KQM+PTK PGPDG   +FYQTY  +VGP+  +A L++L++   +   N T+IALIPKVK P  + DFRPISLCNV YKI+SK + N
Subjt:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

A0A6J1DX30 uncharacterized protein LOC1110248741.9e-5158.03Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ
        EIFWKQR REDWLKWG                                         +A   ++         DIEAI NLIPTRIT E+N  LLAPY +
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQ

Query:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN
        EEIE AI+QMFPTK  GPDGFP LFYQTY HVVGPKT+EACLN LNN  DI+ WN+TYIALIPK+KQP S+ DFRPISLCNVSYKIISKSITN
Subjt:  EEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein1.0e-0928.82Show/hide
Query:  RKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEIN----VWLLAPYNQEEIENAIKQMFPTKTPGPDGFPTLF
        ++  N I  I+N  G  T +  EI+ T   Y++ ++ +      ++E +   + T   P +N      L  P    EI   I  +   K+PGPDGF   F
Subjt:  RKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEIN----VWLLAPYNQEEIENAIKQMFPTKTPGPDGFPTLF

Query:  YQTYCHVVGPKTVEACLNVLNNDGDIRN-WNTTYIALIPKV-KQPGSVFDFRPISLCNVSYKIISKSITN
        YQ Y   + P  ++     +  +G + N +    I LIPK  +      +FRPISL N+  KI++K + N
Subjt:  YQTYCHVVGPKTVEACLNVLNNDGDIRN-WNTTYIALIPKV-KQPGSVFDFRPISLCNVSYKIISKSITN

P08548 LINE-1 reverse transcriptase homolog9.1e-1130.41Show/hide
Query:  TMRKSCNS-IHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNL--IPTRITPEINVWLLAPYNQEEIENAIKQMFPTKTPGPDGFPTL
        T +K   S I  I N N   T +  EI+     Y++ +++    +  +I+       +P     E+ + L  P +  EI + I+ +   K+PGPDGF + 
Subjt:  TMRKSCNS-IHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNL--IPTRITPEINVWLLAPYNQEEIENAIKQMFPTKTPGPDGFPTL

Query:  FYQTYCHVVGPKTVEACLNVLNNDGDIRN-WNTTYIALIPKV-KQPGSVFDFRPISLCNVSYKIISKSITN
        FYQT+   + P  +    N+   +G + N +    I LIPK  K P    ++RPISL N+  KI++K +TN
Subjt:  FYQTYCHVVGPKTVEACLNVLNNDGDIRN-WNTTYIALIPKV-KQPGSVFDFRPISLCNVSYKIISKSITN

P11369 LINE-1 retrotransposable element ORF2 protein3.3e-1331.1Show/hide
Query:  IHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINV----WLLAPYNQEEIENAIKQMFPTKTPGPDGFPTLFYQTYCH
        I+ I N+ G  T + EEI+NT  ++++ ++   S    +++ +   +     P++N      L +P + +EIE  I  +   K+PGPDGF   FYQT+  
Subjt:  IHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINV----WLLAPYNQEEIENAIKQMFPTKTPGPDGFPTLFYQTYCH

Query:  VVGPKTVEACLNVLNNDGDIRN-WNTTYIALIPK-VKQPGSVFDFRPISLCNVSYKIISKSITN
         + P  +    + +  +G + N +    I LIPK  K P  + +FRPISL N+  KI++K + N
Subjt:  VVGPKTVEACLNVLNNDGDIRN-WNTTYIALIPK-VKQPGSVFDFRPISLCNVSYKIISKSITN

P14381 Transposon TX1 uncharacterized 149 kDa protein9.4e-0821.59Show/hide
Query:  DCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQEEIENAIKQMFPTKTP
        D  +++F+     + +   I  +  ++G   E+ E I +   +++Q++F+    S    E + + +P  ++      L  P   +E+  A++ M   K+P
Subjt:  DCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQEEIENAIKQMFPTKTP

Query:  GPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSIT
        G DG    F+Q +   +GP                 +     ++L+PK      + ++RP+SL +  YKI++K+I+
Subjt:  GPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSIT

Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein3.4e-2131.58Show/hide
Query:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSP--SSSDIEAITNLIPTRITPEINVWLLAPY
        E F++Q+ R  WL+ GD NT++FHK     ++ N I  +   +  R E + +++   VAY+  +  S S   +   ++ I ++ P R    +   L A  
Subjt:  EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSP--SSSDIEAITNLIPTRITPEINVWLLAPY

Query:  NQEEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIIS
        + +EI  A+  M   K PGPD F   F+     VV   T+ A          ++ +N T I LIPKV     +  FRP+S C V YKII+
Subjt:  NQEEIENAIKQMFPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGATTTTTTGGAAACAACGCTTTAGGGAAGACTGGCTCAAATGGGGAGATTGTAACACTAAGTGGTTTCACAAAAAGGCCACCATGCGAAAGTCTTGTAATTCTATTCA
TGTCATTGAGAACCAAAATGGGTGCCGGACAGAAGAGTTGGAGGAGATTGAGAATACTTTTGTAGCTTATTTCCAATCTATTTTCACCTCTTCTTCTCCCTCATCATCGG
ATATTGAAGCAATTACAAATCTTATTCCCACAAGGATTACTCCGGAGATAAATGTCTGGCTTTTGGCACCTTATAACCAAGAGGAAATAGAGAATGCCATTAAACAAATG
TTTCCAACGAAAACTCCTGGCCCTGATGGTTTTCCTACTCTTTTCTACCAGACTTATTGCCATGTAGTGGGACCTAAAACAGTAGAGGCTTGTCTTAATGTTCTGAACAA
CGATGGTGATATCCGAAACTGGAATACTACGTATATTGCTCTTATTCCGAAGGTCAAACAACCAGGGTCAGTTTTTGATTTTCGTCCCATAAGTCTGTGCAACGTATCTT
ATAAGATTATTTCTAAATCAATCACTAAT
mRNA sequenceShow/hide mRNA sequence
GAGATTTTTTGGAAACAACGCTTTAGGGAAGACTGGCTCAAATGGGGAGATTGTAACACTAAGTGGTTTCACAAAAAGGCCACCATGCGAAAGTCTTGTAATTCTATTCA
TGTCATTGAGAACCAAAATGGGTGCCGGACAGAAGAGTTGGAGGAGATTGAGAATACTTTTGTAGCTTATTTCCAATCTATTTTCACCTCTTCTTCTCCCTCATCATCGG
ATATTGAAGCAATTACAAATCTTATTCCCACAAGGATTACTCCGGAGATAAATGTCTGGCTTTTGGCACCTTATAACCAAGAGGAAATAGAGAATGCCATTAAACAAATG
TTTCCAACGAAAACTCCTGGCCCTGATGGTTTTCCTACTCTTTTCTACCAGACTTATTGCCATGTAGTGGGACCTAAAACAGTAGAGGCTTGTCTTAATGTTCTGAACAA
CGATGGTGATATCCGAAACTGGAATACTACGTATATTGCTCTTATTCCGAAGGTCAAACAACCAGGGTCAGTTTTTGATTTTCGTCCCATAAGTCTGTGCAACGTATCTT
ATAAGATTATTTCTAAATCAATCACTAAT
Protein sequenceShow/hide protein sequence
EIFWKQRFREDWLKWGDCNTKWFHKKATMRKSCNSIHVIENQNGCRTEELEEIENTFVAYFQSIFTSSSPSSSDIEAITNLIPTRITPEINVWLLAPYNQEEIENAIKQM
FPTKTPGPDGFPTLFYQTYCHVVGPKTVEACLNVLNNDGDIRNWNTTYIALIPKVKQPGSVFDFRPISLCNVSYKIISKSITN