CuGenDBv2

Gene ID	MS000232
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	classical arabinogalactan protein 1-like
Genome location	scaffold44:44874..45254
RNA-Seq Expression	MS000232
Synteny	MS000232
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7030900.1 hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-30

77.87

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+++A+LI S IAQSPSASPSLSP+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS       SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYA
        SGN AAS+SFS+FGSVA VLYA
Subjt:  SGNGAASLSFSVFGSVAVVLYA

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

1.3e-31

77.95

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+ +A+LI S IAQSPSASPSLSP+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS       SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLMI
        SGN AAS+SFS+FGSVA VLYA VLMI
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLMI

XP_022992086.1 classical arabinogalactan protein 1-like [Cucurbita maxima]

7.2e-30

75.59

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+ +A+LI S IAQSPSASPSLSP+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS       SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLMI
        SGN AAS+S S+FGSVA VL+A V MI
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLMI

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

7.7e-32

77.95

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+++A+LI S IAQSPSASPSLSP+KSPSKAPS+SPS++SPKSSPAAAPTP+ L+SPPSPPAASPS SPS SP    SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLMI
        SGN AAS+S S+FGSVA VLYA VLMI
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLMI

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]

1.8e-33

81.89

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA RSF  MIL+ALLIGS IAQSP ASP  SPSKSPSKAPS SPS+KSPKSSPAAAPTPS LKSPPSPP+ SP+TSPS   SPA+SPS ISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLMI
        SGNGAAS+SFSVFGSVAVVLY  VL+I
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLMI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V5Q9 Classical arabinogalactan protein 1-like

3.9e-29

74.8

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA RS   MIL++ LI S  AQ        SP++SPSKAPSVSPS+KSPKSSPA APTPS LKSPPSPP+ SPSTSPSSSPSPA+SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLMI
        SGNGAAS++FSV GS AV LYA VLMI
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLMI

A0A6J1E9Q3 classical arabinogalactan protein 1-like

3.9e-29

76.38

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA RSF VMIL+ALLIGS IAQSP+ASPSLSP KSPSKAPS SPS+KSPKSSP AAPT              P++SPS+SPSPA+SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLMI
        SG+GAAS+SFSVFGSVAVVLYA VLMI
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLMI

A0A6J1FW49 classical arabinogalactan protein 1-like

6.4e-32

77.95

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+ +A+LI S IAQSPSASPSLSP+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS       SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLMI
        SGN AAS+SFS+FGSVA VLYA VLMI
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLMI

A0A6J1J6X2 classical arabinogalactan protein 1-like

5.1e-29

76.38

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA RSF VMIL+ALLIGS IAQSP+ASPSLSP KSPSKAP  SPS+KSPKSSP AAPT              P++SPS+SPSPA+SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLMI
        SGNGAAS+SFSVFGSVAVVLYA VLMI
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLMI

A0A6J1JSK4 classical arabinogalactan protein 1-like

3.5e-30

75.59

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Query:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP
        MA R F VM+ +A+LI S IAQSPSASPSLSP+KSPSKAPS+SPS++SPKSSPAAAPTP+ LKSPPSPPAASPS SPS       SPSSISSPPADAPAP
Subjt:  MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAP

Query:  SGNGAASLSFSVFGSVAVVLYAAVLMI
        SGN AAS+S S+FGSVA VL+A V MI
Subjt:  SGNGAASLSFSVFGSVAVVLYAAVLMI

SwissProt top hits

e value

%identity

Alignment

Q8LCN5 Classical arabinogalactan protein 1

5.1e-10

49.62

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Query:  ARSFAVMILIALLIGSTIAQSPSASPS------LSPSKSPSK--APSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPP
        ++S   ++L ALLI S +AQSP+ +PS      +SP+ SP K  AP+ +P + SP  SPAAA TP    SPPSPP A   T    + SPA SPS+IS  P
Subjt:  ARSFAVMILIALLIGSTIAQSPSASPS------LSPSKSPSK--APSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPP

Query:  ADAPAPSGNGAASLSFSVFGSVAVVLYAAVLMI
         +AP P+  GA S  F+ FGSVAV+L AAVL+I
Subjt:  ADAPAPSGNGAASLSFSVFGSVAVVLYAAVLMI

Arabidopsis top hits

e value

%identity

Alignment

AT5G64310.1 arabinogalactan protein 1

3.6e-11

49.62

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Query:  ARSFAVMILIALLIGSTIAQSPSASPS------LSPSKSPSK--APSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPP
        ++S   ++L ALLI S +AQSP+ +PS      +SP+ SP K  AP+ +P + SP  SPAAA TP    SPPSPP A   T    + SPA SPS+IS  P
Subjt:  ARSFAVMILIALLIGSTIAQSPSASPS------LSPSKSPSK--APSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPP

Query:  ADAPAPSGNGAASLSFSVFGSVAVVLYAAVLMI
         +AP P+  GA S  F+ FGSVAV+L AAVL+I
Subjt:  ADAPAPSGNGAASLSFSVFGSVAVVLYAAVLMI

Sequences

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CDS sequence

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ATGGCAGCCAGAAGTTTTGCGGTAATGATTTTGATCGCATTGTTGATCGGCTCCACAATCGCGCAATCGCCGTCGGCATCGCCGTCATTGTCTCCGAGCAAATCGCCGTC
GAAGGCTCCGTCGGTTTCTCCGTCTATTAAGTCGCCGAAATCTTCTCCGGCGGCGGCTCCTACTCCGTCCGGTCTGAAGTCTCCTCCATCTCCTCCGGCTGCTTCGCCTT
CTACTTCTCCGTCGTCATCTCCGTCTCCGGCCAGTTCTCCTTCCTCGATCTCCTCGCCGCCGGCTGACGCTCCGGCTCCCTCCGGAAACGGCGCCGCTTCGCTCTCGTTC
TCGGTCTTCGGATCTGTGGCTGTGGTGCTATACGCCGCCGTTTTGATGATC

mRNA sequence

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Protein sequence

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MAARSFAVMILIALLIGSTIAQSPSASPSLSPSKSPSKAPSVSPSIKSPKSSPAAAPTPSGLKSPPSPPAASPSTSPSSSPSPASSPSSISSPPADAPAPSGNGAASLSF
SVFGSVAVVLYAAVLMI

MS000232 (gene) of Bitter gourd (TR) v1 genome