CuGenDBv2

Gene ID	MS000233
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	classical arabinogalactan protein 4
Genome location	scaffold44:49752..50303
RNA-Seq Expression	MS000233
Synteny	MS000233
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576849.1 hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-39

66.15

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Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP
        MASF VLNV+TAALLL+SAAANSPLPSPAPSP+SPPW+WTP TESPSSPP  E P PS +PP LSPVPSS  PT PP ANP           PTLSPA  
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP

Query:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA
        PPA K+P HAPSPSK K  APAP+     P +APKSS  P +SPP+P G + PP P+ APT P ADNGGA NRF I G +VA GLMAAAL+A
Subjt:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA

KAG7014869.1 hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-39

66.15

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Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP
        MASF VLNV+TAALLL+SAAANSPLPSPAPSP+SPPW+WTP TESPSSPP  E P PS +PP LSPVPSS  PT PP ANP           PTLSPA  
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP

Query:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA
        PPA K+P HAPSPSK K  APAP+     P +APKSS  P +SPP+P G + PP P+ APT P ADNGGA NRF I G +VA GLMAAAL+A
Subjt:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA

XP_022141102.1 vegetative cell wall protein gp1-like [Momordica charantia]

5.0e-80

96.74

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Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAPPSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATPP
        MASFTVLNVLTAALLLVSA ANSPLPSPAPSPDSPPWQW PGTESPSSPPTAEAPPSENPP LSPVPSSH PTPP AANPPEVSPVPTSHSPTLSPATPP
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAPPSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATPP

Query:  PAAKTPGHAPSPSKMKPAAPAPAPTKAPKSSKAPASPPSPYGGLMPPAPAPAPTPPADNGGAINRFTISGCTVAVGLMAAALMA
        PAAKTPGHAPSPSK KPAAPAPAPTKAPKSSKAPASPPSPYGGLMPPAPAPAPTPPADNGGAINRFTISGCTVAVGLMAAALMA
Subjt:  PAAKTPGHAPSPSKMKPAAPAPAPTKAPKSSKAPASPPSPYGGLMPPAPAPAPTPPADNGGAINRFTISGCTVAVGLMAAALMA

XP_022922559.1 extensin-like [Cucurbita moschata]

2.5e-39

65.62

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Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP
        MASF VLNV+TAALLL+SA+ANSPLPSPAPSP+SPPW+WTP T+SPSSPP  E P PS +PP LSPVPSS  PT PP ANP           PTLSPA  
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP

Query:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA
        PPA K+P HAPSPSK K  APAP+     P +APKSS AP +SPP+P G + PP P+ APT P A+NGGA NRF I G TVA GLMAAAL+A
Subjt:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA

XP_022985113.1 extensin-like [Cucurbita maxima]

6.8e-37

65.1

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Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP
        MASF VLNV+TAALLL+SA+ANSPLPS APSP+S PW+WTP TESPSSPP  E P PS +PP LSPVPSS  PT P  ANP           PTLSPA  
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP

Query:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAPA-SPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA
        PPA K+P HAPSPSK K  APAP+     P +APKSS APA SPP+P G + PP P+ APT P ADNGGA NRF IS  +VA GLMAAAL+A
Subjt:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAPA-SPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CHW9 classical arabinogalactan protein 4

5.4e-32

55.67

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Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP------------PSENPPALSPVPSSHAPTPPPAANPPEVSPVPT
        MAS T+LN+LT A LL+SAAANSP PSPAPS +SP W+WTP  + PSSPPTAE P            P   PP LSPVPSS++PT PP ANP        
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP------------PSENPPALSPVPSSHAPTPPPAANPPEVSPVPT

Query:  SHSPTLSPATPPPAAKTPGHAPSPSKMKPAAPA-----PAPTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPTPPAD-NGGAINRFTISGCTVAVGLMAAA
           PTLSP  PPPA  +P HAPSP+K K  APA     PAP KAPKSSKAP +SPPSP G + PP P+ AP P  + NG   NRF I G ++A G M AA
Subjt:  SHSPTLSPATPPPAAKTPGHAPSPSKMKPAAPA-----PAPTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPTPPAD-NGGAINRFTISGCTVAVGLMAAA

Query:  LMA
         +A
Subjt:  LMA

A0A5A7V3Q7 Classical arabinogalactan protein 4

5.4e-32

55.67

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Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP------------PSENPPALSPVPSSHAPTPPPAANPPEVSPVPT
        MAS T+LN+LT A LL+SAAANSP PSPAPS +SP W+WTP  + PSSPPTAE P            P   PP LSPVPSS++PT PP ANP        
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP------------PSENPPALSPVPSSHAPTPPPAANPPEVSPVPT

Query:  SHSPTLSPATPPPAAKTPGHAPSPSKMKPAAPA-----PAPTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPTPPAD-NGGAINRFTISGCTVAVGLMAAA
           PTLSP  PPPA  +P HAPSP+K K  APA     PAP KAPKSSKAP +SPPSP G + PP P+ AP P  + NG   NRF I G ++A G M AA
Subjt:  SHSPTLSPATPPPAAKTPGHAPSPSKMKPAAPA-----PAPTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPTPPAD-NGGAINRFTISGCTVAVGLMAAA

Query:  LMA
         +A
Subjt:  LMA

A0A6J1CIX2 vegetative cell wall protein gp1-like

2.4e-80

96.74

Show/hide

Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAPPSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATPP
        MASFTVLNVLTAALLLVSA ANSPLPSPAPSPDSPPWQW PGTESPSSPPTAEAPPSENPP LSPVPSSH PTPP AANPPEVSPVPTSHSPTLSPATPP
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAPPSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATPP

Query:  PAAKTPGHAPSPSKMKPAAPAPAPTKAPKSSKAPASPPSPYGGLMPPAPAPAPTPPADNGGAINRFTISGCTVAVGLMAAALMA
        PAAKTPGHAPSPSK KPAAPAPAPTKAPKSSKAPASPPSPYGGLMPPAPAPAPTPPADNGGAINRFTISGCTVAVGLMAAALMA
Subjt:  PAAKTPGHAPSPSKMKPAAPAPAPTKAPKSSKAPASPPSPYGGLMPPAPAPAPTPPADNGGAINRFTISGCTVAVGLMAAALMA

A0A6J1E3R0 extensin-like

1.2e-39

65.62

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Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP
        MASF VLNV+TAALLL+SA+ANSPLPSPAPSP+SPPW+WTP T+SPSSPP  E P PS +PP LSPVPSS  PT PP ANP           PTLSPA  
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP

Query:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA
        PPA K+P HAPSPSK K  APAP+     P +APKSS AP +SPP+P G + PP P+ APT P A+NGGA NRF I G TVA GLMAAAL+A
Subjt:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAP-ASPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA

A0A6J1JCM0 extensin-like

3.3e-37

65.1

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Query:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP
        MASF VLNV+TAALLL+SA+ANSPLPS APSP+S PW+WTP TESPSSPP  E P PS +PP LSPVPSS  PT P  ANP           PTLSPA  
Subjt:  MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAP-PSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATP

Query:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAPA-SPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA
        PPA K+P HAPSPSK K  APAP+     P +APKSS APA SPP+P G + PP P+ APT P ADNGGA NRF IS  +VA GLMAAAL+A
Subjt:  PPAAKTPGHAPSPSKMKPAAPAPA-----PTKAPKSSKAPA-SPPSPYGGLMPPAPAPAPT-PPADNGGAINRFTISGCTVAVGLMAAALMA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G68725.1 arabinogalactan protein 19

1.6e-04

40.83

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Query:  VSAA---ANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAPPSENPPALSPVPSSHAPTPPPAAN---PPEVSPVPTSHSPTLSPATPPPA--AKTPGH
        VSAA   A+   P PA +P SPP        SP++PP     P ++PPA +P  S    +PPPA     P   SP P   SP  +PA+PPPA  +  P  
Subjt:  VSAA---ANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAPPSENPPALSPVPSSHAPTPPPAAN---PPEVSPVPTSHSPTLSPATPPPA--AKTPGH

Query:  APSPSKMKPAAPAPAPTK------------APKSSKAPASPPSPYGGLMPPAPAPAPTPPADNGGAINR
        APSP  + P APAPAPTK            AP  +  P SPPSP     P   APAP+P  + G A+N+
Subjt:  APSPSKMKPAAPAPAPTK------------APKSSKAPASPPSPYGGLMPPAPAPAPTPPADNGGAINR

Sequences

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CDS sequence

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ATGGCTTCTTTCACCGTTCTGAACGTTTTGACGGCGGCGCTTCTGCTCGTTTCCGCCGCCGCCAACTCCCCGCTGCCGTCTCCCGCTCCGAGCCCCGACTCGCCGCCGTG
GCAATGGACTCCCGGTACCGAGTCGCCTTCCTCTCCACCAACAGCGGAGGCACCGCCGTCGGAAAACCCACCGGCGCTCAGCCCCGTTCCGTCATCCCATGCGCCGACTC
CGCCGCCGGCAGCCAACCCACCGGAAGTAAGCCCAGTTCCGACGTCCCATTCACCGACTTTGTCTCCGGCCACTCCGCCACCGGCGGCGAAGACTCCCGGTCACGCACCT
TCGCCGTCGAAAATGAAACCAGCAGCTCCGGCTCCGGCGCCAACGAAGGCTCCAAAATCCTCTAAAGCTCCGGCGAGTCCTCCGTCGCCCTATGGAGGGTTAATGCCCCC
AGCGCCAGCGCCAGCGCCGACGCCACCGGCAGACAACGGCGGCGCTATAAACAGATTCACAATTTCTGGGTGTACTGTTGCAGTTGGATTAATGGCGGCGGCTTTAATGG
CC

mRNA sequence

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Protein sequence

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MASFTVLNVLTAALLLVSAAANSPLPSPAPSPDSPPWQWTPGTESPSSPPTAEAPPSENPPALSPVPSSHAPTPPPAANPPEVSPVPTSHSPTLSPATPPPAAKTPGHAP
SPSKMKPAAPAPAPTKAPKSSKAPASPPSPYGGLMPPAPAPAPTPPADNGGAINRFTISGCTVAVGLMAAALMA

MS000233 (gene) of Bitter gourd (TR) v1 genome