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MS000243 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000243
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease T(2)
Genome locationscaffold44:137364..138540
RNA-Seq ExpressionMS000243
SyntenyMS000243
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462866.1 PREDICTED: ribonuclease 2-like [Cucumis melo]2.0e-2057.65Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFH-AMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAPV+ G+++YF+ A+T+++KY+VTKVL++ G VAS    YPI  ++  ++  F+ A PKITCA+ GVVKELWLCFDK F
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFH-AMPKITCAEDGVVKELWLCFDKDF

XP_022140985.1 ribonuclease 2-like [Momordica charantia]1.2e-2058.33Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAPVI G+F+YF+  +T+++KY+VTKVLNDAG VAS    Y +  ++  ++  F+A PKI+CA+ G VKELWLCFDK F
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF

XP_022140987.1 ribonuclease 2-like [Momordica charantia]1.6e-3891.57Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAP+IKGQ+EYF +A TLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRR FHAMPKITCAEDGVVKE+WLCFDKDF
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF

XP_022922895.1 ribonuclease 2-like [Cucurbita moschata]2.0e-2054.76Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAPVI G+F+YF+  +T+++KY+VTK L+DAG VAS    YP+  ++D ++   ++ PKI+CA+ G VKELW+CFDK F
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF

XP_038876700.1 ribonuclease 2-like [Benincasa hispida]2.8e-2259.52Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAPVI G+++YF+  +T+++KY+VTKVLNDAG VAS    YPI  ++  ++  F++ PKITCA+ GVVKELW+CFDK F
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF

TrEMBL top hitse value%identityAlignment
A0A5A7V3T6 Ribonuclease T(2)9.6e-2157.65Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFH-AMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAPV+ G+++YF+ A+T+++KY+VTKVL++ G VAS    YPI  ++  ++  F+ A PKITCA+ GVVKELWLCFDK F
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFH-AMPKITCAEDGVVKELWLCFDKDF

A0A5D3E236 Ribonuclease T(2)9.6e-2157.65Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFH-AMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAPV+ G+++YF+ A+T+++KY+VTKVL++ G VAS    YPI  ++  ++  F+ A PKITCA+ GVVKELWLCFDK F
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFH-AMPKITCAEDGVVKELWLCFDKDF

A0A6J1CGP7 Ribonuclease T(2)5.7e-2158.33Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAPVI G+F+YF+  +T+++KY+VTKVLNDAG VAS    Y +  ++  ++  F+A PKI+CA+ G VKELWLCFDK F
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF

A0A6J1CIK8 Ribonuclease T(2)7.9e-3991.57Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAP+IKGQ+EYF +A TLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRR FHAMPKITCAEDGVVKE+WLCFDKDF
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF

A0A6J1EA39 Ribonuclease T(2)9.6e-2154.76Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF
        KHGTCAAPVI G+F+YF+  +T+++KY+VTK L+DAG VAS    YP+  ++D ++   ++ PKI+CA+ G VKELW+CFDK F
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVAS-VAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF

SwissProt top hitse value%identityAlignment
C0HKG5 Ribonuclease T2-A6.9e-0836.67Show/hide
Query:  KHGTCAAPV--IKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITC--AEDG----VVKELWLCFDKD
        KHGTCAA V  +  + +YF +++ LY + D+  VL   GI  S+  Y +    D L R++  +PKI C   E G     V ++ LCF K+
Subjt:  KHGTCAAPV--IKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITC--AEDG----VVKELWLCFDKD

C0HKG6 Ribonuclease T2-B6.9e-0836.67Show/hide
Query:  KHGTCAAPV--IKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITC--AEDG----VVKELWLCFDKD
        KHGTCAA V  +  + +YF +++ LY + D+  VL   GI  S+  Y +    D L R++  +PKI C   E G     V ++ LCF K+
Subjt:  KHGTCAAPV--IKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITC--AEDG----VVKELWLCFDKD

O00584 Ribonuclease T24.5e-0735.96Show/hide
Query:  KHGTCAAPV--IKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITC------AEDGVVKELWLCFDK
        KHGTCAA V  +  Q +YF  ++ LY + D+  VL   GI  S+  Y +    D L RV+  +PKI C       E   + ++ LC  K
Subjt:  KHGTCAAPV--IKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITC------AEDGVVKELWLCFDK

P42813 Ribonuclease 19.3e-0532.94Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAEDG----VVKELWLCFDK
        KHGTC+  VI  Q EYF  A+ L  K ++   L  AGI      Y +  I D ++      P + C  DG     + +++LC D+
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAEDG----VVKELWLCFDK

P42814 Ribonuclease 21.1e-1341.67Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVA-PYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF
        KHGTC++PV   ++ YF+  + LY K++VT VL  AG VAS +  YP+  I+  ++  FH  P++ C  D  + E+ +CF KDF
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVA-PYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF

Arabidopsis top hitse value%identityAlignment
AT1G14220.1 Ribonuclease T2 family protein4.8e-0428.57Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAED----GVVKELWLCFD
        KHGTC+  V+  Q EYF  A+ L  K ++ ++L ++GI      Y +  I + ++      P I C +D      + ++++C D
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAED----GVVKELWLCFD

AT2G02990.1 ribonuclease 16.6e-0632.94Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAEDG----VVKELWLCFDK
        KHGTC+  VI  Q EYF  A+ L  K ++   L  AGI      Y +  I D ++      P + C  DG     + +++LC D+
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAEDG----VVKELWLCFDK

AT2G39780.1 ribonuclease 27.8e-1541.67Show/hide
Query:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVA-PYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF
        KHGTC++PV   ++ YF+  + LY K++VT VL  AG VAS +  YP+  I+  ++  FH  P++ C  D  + E+ +CF KDF
Subjt:  KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVA-PYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGCATGGAACCTGCGCAGCTCCGGTAATCAAGGGCCAATTTGAGTACTTCATCGAAGCCATCACCCTTTACACCAAATACGATGTCACCAAAGTTTTGAATGATGCTGG
AATTGTAGCTTCTGTTGCTCCATATCCTATTATGTACATCTTGGATGAACTTCGGAGGGTTTTCCATGCAATGCCAAAGATTACATGTGCTGAAGATGGAGTTGTCAAGG
AACTCTGGCTATGCTTTGACAAAGATTTT
mRNA sequenceShow/hide mRNA sequence
AAGCATGGAACCTGCGCAGCTCCGGTAATCAAGGGCCAATTTGAGTACTTCATCGAAGCCATCACCCTTTACACCAAATACGATGTCACCAAAGTTTTGAATGATGCTGG
AATTGTAGCTTCTGTTGCTCCATATCCTATTATGTACATCTTGGATGAACTTCGGAGGGTTTTCCATGCAATGCCAAAGATTACATGTGCTGAAGATGGAGTTGTCAAGG
AACTCTGGCTATGCTTTGACAAAGATTTT
Protein sequenceShow/hide protein sequence
KHGTCAAPVIKGQFEYFIEAITLYTKYDVTKVLNDAGIVASVAPYPIMYILDELRRVFHAMPKITCAEDGVVKELWLCFDKDF