; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000256 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000256
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionlate embryogenesis abundant protein At5g17165-like
Genome locationscaffold44:367511..373205
RNA-Seq ExpressionMS000256
SyntenyMS000256
Gene Ontology termsNA
InterPro domainsIPR039291 - Late embryogenesis abundant protein At5g17165-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576842.1 Late embryogenesis abundant protein, partial [Cucurbita argyrosperma subsp. sororia]7.0e-4982.95Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAAK-A
        MAANSRSAGAIAGL KRIT+QIW  DPLRNSAISS+APKFRRAAHTS YDKN DEQ RPSIVPD+VIQPQ  DKYWAPHPQTGVFGP T +P AA A   
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAAK-A

Query:  ANGGSYA-VEEEKAWFRPTSLEDSEKPHG
        ANGG+Y+ VEEEKAWFRPTSLEDSEKPHG
Subjt:  ANGGSYA-VEEEKAWFRPTSLEDSEKPHG

XP_004146886.1 late embryogenesis abundant protein At5g17165 [Cucumis sativus]5.7e-5182.58Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ--PDKYWAPHPQTGVFGPVTDHPTAAAA--
        MAANSRS GAIAGLGKRIT+QIWT DPLRNS ISSSAPKFRRAAHTSVYDKNP+EQ RPSIVPD+VIQPQ   D YWAPHPQTGVFGP +D+P A AA  
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ--PDKYWAPHPQTGVFGPVTDHPTAAAA--

Query:  -KAANGGSY-AVEEEKAWFRPTSLEDSEKPHG
         +AA+GG+Y AVEEEKAWFRPTSLEDSEKPHG
Subjt:  -KAANGGSY-AVEEEKAWFRPTSLEDSEKPHG

XP_008453829.1 PREDICTED: uncharacterized protein LOC103494437 [Cucumis melo]5.3e-4983.21Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWT-SDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAA--
        MAANSRSAGAIAGLGKRIT+QIWT SD LRNS ISSSAPKFRRAAHTSVYDKNP+EQ RPSIVPD+VIQPQ  DKYWAPHPQTGVFGP +D+P A AA  
Subjt:  MAANSRSAGAIAGLGKRITNQIWT-SDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAA--

Query:  KAANGGSY-AVEEEKAWFRPTSLEDSEKPHG
        +AA+ G+Y A EEEKAWFRPTSLEDSEKPHG
Subjt:  KAANGGSY-AVEEEKAWFRPTSLEDSEKPHG

XP_022140901.1 late embryogenesis abundant protein At5g17165-like [Momordica charantia]3.1e-65100Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN
        MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN

Query:  GGSYAVEEEKAWFRPTSLEDSEKPHGH
        GGSYAVEEEKAWFRPTSLEDSEKPHGH
Subjt:  GGSYAVEEEKAWFRPTSLEDSEKPHGH

XP_038901450.1 late embryogenesis abundant protein At5g17165-like [Benincasa hispida]3.3e-5184.5Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAA-KA
        MAANSRSAG IAGLGKRIT+QIWTSDPLRNS ISSSAPK RRAAHTS YDKNPDEQ RPS+VPD+VIQ Q  DKYWAPHPQTGVFGP +D+P AAAA +A
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAA-KA

Query:  ANGGSY-AVEEEKAWFRPTSLEDSEKPHG
        A+GG+Y AVEEEKAWFRPTSLEDSEKPHG
Subjt:  ANGGSY-AVEEEKAWFRPTSLEDSEKPHG

TrEMBL top hitse value%identityAlignment
A0A1S3BYE5 uncharacterized protein LOC1034944372.6e-4983.21Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWT-SDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAA--
        MAANSRSAGAIAGLGKRIT+QIWT SD LRNS ISSSAPKFRRAAHTSVYDKNP+EQ RPSIVPD+VIQPQ  DKYWAPHPQTGVFGP +D+P A AA  
Subjt:  MAANSRSAGAIAGLGKRITNQIWT-SDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAA--

Query:  KAANGGSY-AVEEEKAWFRPTSLEDSEKPHG
        +AA+ G+Y A EEEKAWFRPTSLEDSEKPHG
Subjt:  KAANGGSY-AVEEEKAWFRPTSLEDSEKPHG

A0A6J1CHE9 late embryogenesis abundant protein At5g17165-like1.5e-65100Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN
        MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN

Query:  GGSYAVEEEKAWFRPTSLEDSEKPHGH
        GGSYAVEEEKAWFRPTSLEDSEKPHGH
Subjt:  GGSYAVEEEKAWFRPTSLEDSEKPHGH

A0A6J1E3E9 late embryogenesis abundant protein At5g17165-like6.4e-4881.4Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAAK-A
        MAANSRSAGAIAGL KRIT+QIW  DPLRNSAISS+APKFRRAAH+S YDKN DEQ RPSIVPD+VIQPQ  DKYWAP+PQTGVFGP T +P AA A   
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAAK-A

Query:  ANGGSYA-VEEEKAWFRPTSLEDSEKPHG
        ANGG+Y+ VEEEKAWFRPTSLEDSEKPHG
Subjt:  ANGGSYA-VEEEKAWFRPTSLEDSEKPHG

A0A6J1FNH5 late embryogenesis abundant protein At5g17165-like isoform X15.4e-4782.17Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAA-AKA
        MAANSRSAGAIAGLGKRITNQIWTSD    SAISSSA KFRRAAHTS YDKNPDEQ RPSIVPD+VIQPQ  +KYWAPHP TGVFGP  D PTAAA ++A
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAA-AKA

Query:  ANGGSY-AVEEEKAWFRPTSLEDSEKPHG
        A+GG++ A EEEKAWFRPTSLEDSEKPHG
Subjt:  ANGGSY-AVEEEKAWFRPTSLEDSEKPHG

A0A6J1JAZ8 late embryogenesis abundant protein At5g17165-like4.4e-4982.95Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAAK-A
        MAANSRSAGAIAGL KRIT+QIWT DPLRNSAISS+APKFRRAAHTS YDKN DEQ RPSIVPD+VIQPQ  DKYWAPHPQTGVFGP T +P AA A   
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQ-PDKYWAPHPQTGVFGPVTDHPTAAAAK-A

Query:  ANGGSYA-VEEEKAWFRPTSLEDSEKPHG
        A+GG+Y+ VEEEKAWFRPTSLEDSEKPHG
Subjt:  ANGGSYA-VEEEKAWFRPTSLEDSEKPHG

SwissProt top hitse value%identityAlignment
F4KFM8 Late embryogenesis abundant protein At5g171655.4e-2048Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN
        MAA S++   I  +G+ I N +      R+ A++      R   HTS YDKN +E+ +PS VPDE+I+P  DKYW+PHPQTGVFGP +   T A  +   
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN

Query:  GGSYAVEEEKAWFRPTSLEDSEKPH
        G   +V EEKAWFRPTSLED +K H
Subjt:  GGSYAVEEEKAWFRPTSLEDSEKPH

Arabidopsis top hitse value%identityAlignment
AT3G03150.1 unknown protein2.2e-2147.93Show/hide
Query:  SRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAANGGSY
        S+S   I  L K + N           A +S+    RR+ H+S YDKN +++   S VPDEVI+P  DKYW+PHP+TGVFGP T   +A A  A      
Subjt:  SRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAANGGSY

Query:  AVEEEKAWFRPTSLEDSEKPH
        AV EE AWFRPTSLEDS+K H
Subjt:  AVEEEKAWFRPTSLEDSEKPH

AT5G17165.1 unknown protein3.8e-2148Show/hide
Query:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN
        MAA S++   I  +G+ I N +      R+ A++      R   HTS YDKN +E+ +PS VPDE+I+P  DKYW+PHPQTGVFGP +   T A  +   
Subjt:  MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAAN

Query:  GGSYAVEEEKAWFRPTSLEDSEKPH
        G   +V EEKAWFRPTSLED +K H
Subjt:  GGSYAVEEEKAWFRPTSLEDSEKPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCTAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGGGGAAACGAATCACGAACCAGATCTGGACCAGCGATCCACTTCGCAACTCCGCGATCTCTTCCTCTGC
TCCCAAGTTCAGGAGGGCTGCCCACACCTCAGTGTATGACAAGAACCCAGACGAGCAAGCTCGGCCAAGCATAGTCCCAGATGAGGTGATTCAGCCTCAACCTGATAAAT
ACTGGGCTCCTCATCCTCAAACCGGCGTCTTCGGGCCGGTCACCGACCACCCTACTGCCGCTGCTGCAAAAGCAGCCAATGGTGGCAGCTACGCGGTGGAAGAGGAGAAG
GCTTGGTTCCGACCTACCAGTCTAGAGGATTCCGAGAAGCCCCACGGGCAC
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCTAATTCGAGGAGCGCAGGAGCGATCGCCGGCTTGGGGAAACGAATCACGAACCAGATCTGGACCAGCGATCCACTTCGCAACTCCGCGATCTCTTCCTCTGC
TCCCAAGTTCAGGAGGGCTGCCCACACCTCAGTGTATGACAAGAACCCAGACGAGCAAGCTCGGCCAAGCATAGTCCCAGATGAGGTGATTCAGCCTCAACCTGATAAAT
ACTGGGCTCCTCATCCTCAAACCGGCGTCTTCGGGCCGGTCACCGACCACCCTACTGCCGCTGCTGCAAAAGCAGCCAATGGTGGCAGCTACGCGGTGGAAGAGGAGAAG
GCTTGGTTCCGACCTACCAGTCTAGAGGATTCCGAGAAGCCCCACGGGCAC
Protein sequenceShow/hide protein sequence
MAANSRSAGAIAGLGKRITNQIWTSDPLRNSAISSSAPKFRRAAHTSVYDKNPDEQARPSIVPDEVIQPQPDKYWAPHPQTGVFGPVTDHPTAAAAKAANGGSYAVEEEK
AWFRPTSLEDSEKPHGH