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MS000287 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000287
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionautophagy-related protein 3
Genome locationscaffold44:625662..625790
RNA-Seq ExpressionMS000287
SyntenyMS000287
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0000422 - autophagy of mitochondrion (biological process)
GO:0044804 - autophagy of nucleus (biological process)
GO:0000153 - cytoplasmic ubiquitin ligase complex (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0019776 - Atg8 ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592939.1 Autophagy-related protein 3, partial [Cucurbita argyrosperma subsp. sororia]2.2e-0767.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
KAG7025347.1 Autophagy-related protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-0767.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
XP_022141116.1 autophagy-related protein 3 [Momordica charantia]4.5e-16100Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
XP_022959612.1 autophagy-related protein 3-like [Cucurbita moschata]2.2e-0767.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
XP_023514388.1 autophagy-related protein 3-like [Cucurbita pepo subsp. pepo]2.2e-0767.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
TrEMBL top hitse value%identityAlignment
A0A1S3CAI3 autophagy-related protein 31.1e-0767.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
A0A6J1CI24 autophagy-related protein 32.2e-16100Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
A0A6J1H4I9 autophagy-related protein 3-like1.1e-0767.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
A0A6J1IFS6 autophagy-related protein 3-like1.1e-0767.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
B9R9V7 Autophagy_act_C domain-containing protein1.1e-0767.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
SwissProt top hitse value%identityAlignment
Q0WWQ1 Autophagy-related protein 35.0e-1067.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
Arabidopsis top hitse value%identityAlignment
AT5G61500.1 autophagy 3 (APG3)3.5e-1167.44Show/hide
Query:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK
        VTIEDHPHL GKHASVHP   GA +KK++D  +SRG+E EV K
Subjt:  VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTAACTATTGAAGACCATCCTCATTTGCTTGGGAAGCATGCATCTGTACACCCAAGATATCAGGGAGCTGCAGTGAAGAAAATGGTTGATGACTGTTTGTCACGTGGGAT
TGAGCTAGAAGTTCGCAAG
mRNA sequenceShow/hide mRNA sequence
GTAACTATTGAAGACCATCCTCATTTGCTTGGGAAGCATGCATCTGTACACCCAAGATATCAGGGAGCTGCAGTGAAGAAAATGGTTGATGACTGTTTGTCACGTGGGAT
TGAGCTAGAAGTTCGCAAG
Protein sequenceShow/hide protein sequence
VTIEDHPHLLGKHASVHPRYQGAAVKKMVDDCLSRGIELEVRK