; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000289 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000289
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase III subunit rpc4-like
Genome locationscaffold44:637526..638880
RNA-Seq ExpressionMS000289
SyntenyMS000289
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0006412 - translation (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR007811 - DNA-directed RNA polymerase III subunit RPC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044650.1 DNA-directed RNA polymerase III subunit rpc4-like [Cucumis melo var. makuwa]1.5e-10473.23Show/hide
Query:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN
        +SVQVAFGPGA S SSSIRTYGVPKV N SRKN+IEPE+ +DEE +LP+ +DV EDG  FD+K++DG  ES   +++ ++TK K+DY+EPWDY +SYYP 
Subjt:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN

Query:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM
        TLPLR PYSG PE LD+AEFG DA +REYDEN+ IPALDL L +E  E T YFFQLPA LPLPKQSSTAT KEKVG+SRSSNS  +S+L DLKKL  GCM
Subjt:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM

Query:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        GKLLIYKSGA+KLRLG+ LYDVSSGS+CSFLQHVVAINTE+G CCDLGD+GKRVVVTPDISSLLN+VT+
Subjt:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

XP_004146914.1 DNA-directed RNA polymerase III subunit rpc4 [Cucumis sativus]3.2e-10473.61Show/hide
Query:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN
        +SVQVAFGPGA S SSSIRTYGVPKV N SRKN+IEPE+ +DEE +LP+  DV EDG  FD+K++DG  ES   +++ + TK K+DY+EPWDY +SYYP 
Subjt:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN

Query:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM
        TLPLR PYSG PE LD+AEFG D  +REYDEN+ IPALDL LL+E  E T YFFQLPA LPLPKQSSTAT KEKVG+SRSSNS  +S+L DLKKL  GCM
Subjt:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM

Query:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        GKLLIYKSGA+KLRLG+ LYDVSSGSNCSFLQHVVAINTEEG CCDLGD+G RVVVTPDISSLLN+VT+
Subjt:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

XP_022141050.1 DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Momordica charantia]3.2e-14499.26Show/hide
Query:  SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT
        SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT
Subjt:  SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT

Query:  LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELL-EEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM
        LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELL EEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGG M
Subjt:  LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELL-EEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM

Query:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
Subjt:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

XP_022141051.1 DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Momordica charantia]1.3e-14599.63Show/hide
Query:  SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT
        SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT
Subjt:  SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT

Query:  LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCMG
        LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGG MG
Subjt:  LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCMG

Query:  KLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        KLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
Subjt:  KLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

XP_038879339.1 DNA-directed RNA polymerase III subunit rpc4-like [Benincasa hispida]2.0e-10975.84Show/hide
Query:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN
        +SVQVAFGPGAAS SSSIRTYGVPKV NSSRKN+IEP++ +DEE ILPLP+DVEE+G IFD+K++DG  ES   +++ ++TK KKDY+EPWDYH+S YP 
Subjt:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN

Query:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM
        TLP+R PYSG PE LD+AEFG DA DREYDE++ IPALDL LL+EK E T YFFQLPA LPLPKQSSTAT KEKVG+ RSS S G+SELGDLKKL  GCM
Subjt:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM

Query:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        GKLLIYKSGA+KLRLG+TLYDVSSGS+CSFLQHVVAINT+EG CCDLGD+GKRV+VTPDISSLLN++T+
Subjt:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

TrEMBL top hitse value%identityAlignment
A0A0A0KZ61 Uncharacterized protein1.6e-10473.61Show/hide
Query:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN
        +SVQVAFGPGA S SSSIRTYGVPKV N SRKN+IEPE+ +DEE +LP+  DV EDG  FD+K++DG  ES   +++ + TK K+DY+EPWDY +SYYP 
Subjt:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN

Query:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM
        TLPLR PYSG PE LD+AEFG D  +REYDEN+ IPALDL LL+E  E T YFFQLPA LPLPKQSSTAT KEKVG+SRSSNS  +S+L DLKKL  GCM
Subjt:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM

Query:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        GKLLIYKSGA+KLRLG+ LYDVSSGSNCSFLQHVVAINTEEG CCDLGD+G RVVVTPDISSLLN+VT+
Subjt:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

A0A1S3BYJ9 DNA-directed RNA polymerase III subunit rpc4-like7.8e-10472.86Show/hide
Query:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN
        +SVQVAFGPGA S SSSIRTYGVPKV N SRKN+IEPE+ +DEE +LP+ +DV EDG  FD+K++DG  ES   +++ ++TK K+DY+EPWDY +SYYP 
Subjt:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN

Query:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM
        TLPLR PYSG  E LD+AEFG DA +REYDEN+ IPALDL L +E  E T YFFQLPA LPLPKQSSTAT KEKVG+SRSSNS  +S+L DLKKL  GCM
Subjt:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM

Query:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        GKLLIYKSGA+KLRLG+ LYDVSSGS+CSFLQHVVAINTE+G CCDLGD+GKRVVVTPDISSLLN+VT+
Subjt:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

A0A5A7TN83 DNA-directed RNA polymerase III subunit rpc4-like7.0e-10573.23Show/hide
Query:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN
        +SVQVAFGPGA S SSSIRTYGVPKV N SRKN+IEPE+ +DEE +LP+ +DV EDG  FD+K++DG  ES   +++ ++TK K+DY+EPWDY +SYYP 
Subjt:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN

Query:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM
        TLPLR PYSG PE LD+AEFG DA +REYDEN+ IPALDL L +E  E T YFFQLPA LPLPKQSSTAT KEKVG+SRSSNS  +S+L DLKKL  GCM
Subjt:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM

Query:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        GKLLIYKSGA+KLRLG+ LYDVSSGS+CSFLQHVVAINTE+G CCDLGD+GKRVVVTPDISSLLN+VT+
Subjt:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

A0A6J1CGV5 DNA-directed RNA polymerase III subunit RPC4-like isoform X11.5e-14499.26Show/hide
Query:  SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT
        SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT
Subjt:  SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT

Query:  LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELL-EEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM
        LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELL EEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGG M
Subjt:  LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELL-EEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCM

Query:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
Subjt:  GKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

A0A6J1CHV0 DNA-directed RNA polymerase III subunit RPC4-like isoform X26.3e-14699.63Show/hide
Query:  SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT
        SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT
Subjt:  SVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNT

Query:  LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCMG
        LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGG MG
Subjt:  LPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCMG

Query:  KLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        KLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
Subjt:  KLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

SwissProt top hitse value%identityAlignment
P05423 DNA-directed RNA polymerase III subunit RPC41.5e-0831.95Show/hide
Query:  DKAEFGLDAPDREYDENAAIP--ALDLELLEE---KEEKTMYFFQLPACLP--LPKQSSTATRKEKVG---------SSRSSNSKGTSELGDLKKLPGGC
        ++ E  + AP +   +   +P      ELL E    +E+ + F QLP  LP   P Q     + E  G           +   +K       L  L  G 
Subjt:  DKAEFGLDAPDREYDENAAIP--ALDLELLEE---KEEKTMYFFQLPACLP--LPKQSSTATRKEKVG---------SSRSSNSKGTSELGDLKKLPGGC

Query:  MGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAI---NTEEGHCCDLGDVGKRVVVTPDISSLLN
        +GKLLI KSG V+L LG+   DV+ G+ CSFLQ +V++   ++  G    LG V  ++V +PD  SLL+
Subjt:  MGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAI---NTEEGHCCDLGDVGKRVVVTPDISSLLN

P25441 DNA-directed RNA polymerase III subunit RPC44.7e-0529.01Show/hide
Query:  LELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNS--------KGTSELGDLKKLPGGCMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFL
        L+ +  K E+ M  FQLP  LP  ++ +    KE + +  S  S        K T +    ++L  G +G + ++KSG + +++G  + D+  G+  +FL
Subjt:  LELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNS--------KGTSELGDLKKLPGGCMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFL

Query:  QHVVAIN-TEEGHCCD-LGDVGKRVVVTPDI
        Q V+A++  ++    + LG V  ++VVTP I
Subjt:  QHVVAIN-TEEGHCCD-LGDVGKRVVVTPDI

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC41.7e-0733.79Show/hide
Query:  ELLEE---KEEKTMYFFQLPACLP-LPKQSSTATRKEKVGSS-------------RSSNSKGTSELGDLKKLPGGCMGKLLIYKSGAVKLRLGETLYDVS
        ELL E    +E+ + F QLP  LP  P        K +V S               +  ++ T  L DL +   G +GKLLI KSG V+L LG+   DV+
Subjt:  ELLEE---KEEKTMYFFQLPACLP-LPKQSSTATRKEKVGSS-------------RSSNSKGTSELGDLKKLPGGCMGKLLIYKSGAVKLRLGETLYDVS

Query:  SGSNCSFLQHVVAI---NTEEGHCCDLGDVGKRVVVTPDISSLLN
         G+ CSFLQ +V++   ++  G    LG +  ++V +P+  SLL+
Subjt:  SGSNCSFLQHVVAI---NTEEGHCCDLGDVGKRVVVTPDISSLLN

Q8T1V7 DNA-directed RNA polymerase III subunit rpc45.5e-0637.66Show/hide
Query:  LKKLPGGCMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEG-----HCCDLGDVGKRVVVTPDISSL
        +K++P G +G L IYKSG   L++G   YD+SSG    FL+ V    T+ G      C  LG   + +V  P IS +
Subjt:  LKKLPGGCMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEG-----HCCDLGDVGKRVVVTPDISSL

Q91WD1 DNA-directed RNA polymerase III subunit RPC44.5e-0826.59Show/hide
Query:  EPEISDDEESILPLPVDVEEDGMIFDQKSED--------GTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNTLPLRKPYSGHPELLDKAEFGLDAPDR
        +P + +D  + +P+ + +   G +F ++SE+        G  E  M  + V   K K++ R+  +      P     + P  G P+ +  AE        
Subjt:  EPEISDDEESILPLPVDVEEDGMIFDQKSED--------GTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNTLPLRKPYSGHPELLDKAEFGLDAPDR

Query:  EYDENAAIPALDLELLEEKEEKTMYFFQLPACLP--LPKQSSTATRKEKVG---------SSRSSNSKGTSELGDLKKLPGGCMGKLLIYKSGAVKLRLG
                   +L L++++E   + F QLP  LP   P Q     + E  G           +   ++       L  L  G +GKLLI KSG V+L LG
Subjt:  EYDENAAIPALDLELLEEKEEKTMYFFQLPACLP--LPKQSSTATRKEKVG---------SSRSSNSKGTSELGDLKKLPGGCMGKLLIYKSGAVKLRLG

Query:  ETLYDVSSGSNCSFLQHVVAI---NTEEGHCCDLGDVGKRVVVTPDISSLLN
        +   DV+ G+ CSFLQ +V++   ++  G    LG V  ++V +PD  SLL+
Subjt:  ETLYDVSSGSNCSFLQHVVAI---NTEEGHCCDLGDVGKRVVVTPDISSLLN

Arabidopsis top hitse value%identityAlignment
AT4G25180.1 RNA polymerase III RPC41.7e-3940.37Show/hide
Query:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN
        +S +VAF P  +    +IR++GVPK  +    +++ P       SILP    V           EDG            +T+   DY EPWDY +SYYP 
Subjt:  ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPN

Query:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLE-EKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGC
         LPLRKP SG  ELLD+ EFG  A +R+YDEN    A +L L   +  +K M+ F++P CLP+ KQ++ AT K  V    S  S         + LP G 
Subjt:  TLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLE-EKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGC

Query:  MGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD
        MGK+L+YKSGAVKL++G+ L+DVS G        VVAI+ +  +C  +G   K V VTPD+ SLLN  +D
Subjt:  MGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD

AT5G09380.1 RNA polymerase III RPC43.1e-3647.83Show/hide
Query:  DYREPWDYHHSYYPNTLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKG
        +Y+EPWDY +SYYP TLP+R+PY+G PE+LD  EF        + E++   A +L L+E+  E+ M+F +LP+ +PL   +ST T   +       N KG
Subjt:  DYREPWDYHHSYYPNTLPLRKPYSGHPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKG

Query:  TSE--LGDLKKLPGGCMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAV
          E    DLK LP G MGKLL+YKSGAVK++LGE LYDVS G    F Q V+ +NTE+ +CC +GDV K  V+TPDI S+L  +
Subjt:  TSE--LGDLKKLPGGCMGKLLIYKSGAVKLRLGETLYDVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTTCAGTCCAAGTTGCATTTGGTCCCGGAGCAGCATCAGCATCATCTTCCATAAGAACATATGGTGTTCCCAAAGTGGGGAACAGTAGTAGAAAAAATAACATTGAGCC
TGAAATTTCTGACGATGAGGAATCTATCTTGCCTCTCCCTGTGGATGTTGAAGAAGATGGGATGATTTTCGATCAAAAAAGCGAAGATGGAACACCCGAATCCGCCATGG
CTACCAATGCTGTGGTACTAACCAAGGCCAAGAAGGATTACAGAGAACCTTGGGATTACCATCATTCTTACTATCCCAATACGCTTCCTTTACGGAAGCCTTACTCCGGA
CACCCAGAACTACTTGATAAAGCTGAATTCGGGCTGGATGCACCGGATAGGGAGTATGACGAGAACGCTGCAATACCTGCATTAGATCTAGAATTGCTGGAGGAAAAGGA
GGAGAAGACTATGTACTTTTTTCAGCTTCCTGCCTGTCTTCCTTTACCCAAACAATCATCTACTGCAACAAGGAAGGAGAAAGTAGGAAGTTCGAGATCTTCGAACAGCA
AAGGCACGTCAGAGCTCGGCGATTTGAAGAAATTGCCTGGTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTTGGAGAAACTCTTTAC
GACGTTTCTTCTGGTTCAAACTGCAGCTTTCTTCAACATGTTGTGGCAATCAACACCGAAGAGGGACACTGCTGTGATCTCGGAGATGTCGGAAAACGAGTCGTTGTGAC
GCCGGATATTAGTTCCCTGCTGAATGCAGTGACTGAC
mRNA sequenceShow/hide mRNA sequence
GCTTCAGTCCAAGTTGCATTTGGTCCCGGAGCAGCATCAGCATCATCTTCCATAAGAACATATGGTGTTCCCAAAGTGGGGAACAGTAGTAGAAAAAATAACATTGAGCC
TGAAATTTCTGACGATGAGGAATCTATCTTGCCTCTCCCTGTGGATGTTGAAGAAGATGGGATGATTTTCGATCAAAAAAGCGAAGATGGAACACCCGAATCCGCCATGG
CTACCAATGCTGTGGTACTAACCAAGGCCAAGAAGGATTACAGAGAACCTTGGGATTACCATCATTCTTACTATCCCAATACGCTTCCTTTACGGAAGCCTTACTCCGGA
CACCCAGAACTACTTGATAAAGCTGAATTCGGGCTGGATGCACCGGATAGGGAGTATGACGAGAACGCTGCAATACCTGCATTAGATCTAGAATTGCTGGAGGAAAAGGA
GGAGAAGACTATGTACTTTTTTCAGCTTCCTGCCTGTCTTCCTTTACCCAAACAATCATCTACTGCAACAAGGAAGGAGAAAGTAGGAAGTTCGAGATCTTCGAACAGCA
AAGGCACGTCAGAGCTCGGCGATTTGAAGAAATTGCCTGGTGGATGTATGGGGAAACTACTGATATACAAGAGTGGAGCTGTTAAGTTGAGGCTTGGAGAAACTCTTTAC
GACGTTTCTTCTGGTTCAAACTGCAGCTTTCTTCAACATGTTGTGGCAATCAACACCGAAGAGGGACACTGCTGTGATCTCGGAGATGTCGGAAAACGAGTCGTTGTGAC
GCCGGATATTAGTTCCCTGCTGAATGCAGTGACTGAC
Protein sequenceShow/hide protein sequence
ASVQVAFGPGAASASSSIRTYGVPKVGNSSRKNNIEPEISDDEESILPLPVDVEEDGMIFDQKSEDGTPESAMATNAVVLTKAKKDYREPWDYHHSYYPNTLPLRKPYSG
HPELLDKAEFGLDAPDREYDENAAIPALDLELLEEKEEKTMYFFQLPACLPLPKQSSTATRKEKVGSSRSSNSKGTSELGDLKKLPGGCMGKLLIYKSGAVKLRLGETLY
DVSSGSNCSFLQHVVAINTEEGHCCDLGDVGKRVVVTPDISSLLNAVTD