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MS000299 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000299
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold44:739148..739464
RNA-Seq ExpressionMS000299
SyntenyMS000299
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-1339.81Show/hide
Query:  ALLSKWLWRLIFEKDSLWCRFIMAKYSSHHPSATPS-------QSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALSTKKS
        ALL KWLW+ + EKD LW R I++KY      + PS        SPW  + +C     + ++ W + +G+D  FW  NW    PL LA  R +ALST K 
Subjt:  ALLSKWLWRLIFEKDSLWCRFIMAKYSSHHPSATPS-------QSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALSTKKS

Query:  MSVFEAWD
         SV E W+
Subjt:  MSVFEAWD

KAA0058980.1 uncharacterized protein E6C27_scaffold98G001710 [Cucumis melo var. makuwa]7.8e-1439.64Show/hide
Query:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST
        + KALLSKWLWR   E ++LW R I  KY   HP       S++ S++PW  I+  +    +S+  W + NG    FWY NW+  G L  A  R +AL+ 
Subjt:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST

Query:  KKSMSVFEAWD
         K +SV +AW+
Subjt:  KKSMSVFEAWD

TYJ99315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-1339.64Show/hide
Query:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST
        + KALLSKWLWR + E ++LW R I  KY    P       S++ S++PW  I+  S    +S+  W + NG    FWY NW+  G L  A  R +AL+ 
Subjt:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST

Query:  KKSMSVFEAWD
         K +SV +AW+
Subjt:  KKSMSVFEAWD

TYK03140.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.0e-1338.74Show/hide
Query:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST
        + KALL+KWLWR + E ++LW R I  KY   +P       S++ S++PW  I+  +    +S+  W + NG    FWY NW+  G L  A  R +ALS 
Subjt:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST

Query:  KKSMSVFEAWD
         K +SV +AW+
Subjt:  KKSMSVFEAWD

TYK11012.1 uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa]7.8e-1439.64Show/hide
Query:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST
        + KALLSKWLWR   E ++LW R I  KY   HP       S++ S++PW  I+  +    +S+  W + NG    FWY NW+  G L  A  R +AL+ 
Subjt:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST

Query:  KKSMSVFEAWD
         K +SV +AW+
Subjt:  KKSMSVFEAWD

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.1e-1339.81Show/hide
Query:  ALLSKWLWRLIFEKDSLWCRFIMAKYSSHHPSATPS-------QSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALSTKKS
        ALL KWLW+ + EKD LW R I++KY      + PS        SPW  + +C     + ++ W + +G+D  FW  NW    PL LA  R +ALST K 
Subjt:  ALLSKWLWRLIFEKDSLWCRFIMAKYSSHHPSATPS-------QSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALSTKKS

Query:  MSVFEAWD
         SV E W+
Subjt:  MSVFEAWD

A0A5A7UV84 Reverse transcriptase domain-containing protein3.8e-1439.64Show/hide
Query:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST
        + KALLSKWLWR   E ++LW R I  KY   HP       S++ S++PW  I+  +    +S+  W + NG    FWY NW+  G L  A  R +AL+ 
Subjt:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST

Query:  KKSMSVFEAWD
         K +SV +AW+
Subjt:  KKSMSVFEAWD

A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein6.4e-1439.64Show/hide
Query:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST
        + KALLSKWLWR + E ++LW R I  KY    P       S++ S++PW  I+  S    +S+  W + NG    FWY NW+  G L  A  R +AL+ 
Subjt:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST

Query:  KKSMSVFEAWD
         K +SV +AW+
Subjt:  KKSMSVFEAWD

A0A5D3BVM7 LINE-1 retrotransposable element ORF2 protein2.4e-1338.74Show/hide
Query:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST
        + KALL+KWLWR + E ++LW R I  KY   +P       S++ S++PW  I+  +    +S+  W + NG    FWY NW+  G L  A  R +ALS 
Subjt:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST

Query:  KKSMSVFEAWD
         K +SV +AW+
Subjt:  KKSMSVFEAWD

A0A5D3CI86 Reverse transcriptase domain-containing protein3.8e-1439.64Show/hide
Query:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST
        + KALLSKWLWR   E ++LW R I  KY   HP       S++ S++PW  I+  +    +S+  W + NG    FWY NW+  G L  A  R +AL+ 
Subjt:  STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHP-------SATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALST

Query:  KKSMSVFEAWD
         K +SV +AW+
Subjt:  KKSMSVFEAWD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCACAAAAGCTTTACTTTCAAAATGGCTATGGCGATTAATTTTTGAGAAAGACAGTCTCTGGTGCAGGTTTATTATGGCTAAATATTCATCTCACCACCCTAGCGCGAC
ACCATCCCAATCACCTTGGACTCATATCGTTAAATGCTCTCATCGCCTAAGTCGTAGTTCATTAAAATGGTCTATCGGAAATGGCAAAGATACTTTCTTTTGGTACCACA
ATTGGACTGATTTAGGTCCTCTTTATCTTGCACAGCTTCGTTTCTACGCACTCTCCACCAAAAAATCTATGTCTGTTTTTGAAGCTTGGGAT
mRNA sequenceShow/hide mRNA sequence
TCCACAAAAGCTTTACTTTCAAAATGGCTATGGCGATTAATTTTTGAGAAAGACAGTCTCTGGTGCAGGTTTATTATGGCTAAATATTCATCTCACCACCCTAGCGCGAC
ACCATCCCAATCACCTTGGACTCATATCGTTAAATGCTCTCATCGCCTAAGTCGTAGTTCATTAAAATGGTCTATCGGAAATGGCAAAGATACTTTCTTTTGGTACCACA
ATTGGACTGATTTAGGTCCTCTTTATCTTGCACAGCTTCGTTTCTACGCACTCTCCACCAAAAAATCTATGTCTGTTTTTGAAGCTTGGGAT
Protein sequenceShow/hide protein sequence
STKALLSKWLWRLIFEKDSLWCRFIMAKYSSHHPSATPSQSPWTHIVKCSHRLSRSSLKWSIGNGKDTFFWYHNWTDLGPLYLAQLRFYALSTKKSMSVFEAWD