; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000300 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000300
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold44:739495..739821
RNA-Seq ExpressionMS000300
SyntenyMS000300
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-0931.9Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLA---VSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ
        +I A+  +P  NRG  + LW  + N +F   S+K  +A   +S    +   +   W +  PKKCKF I       +N  ++LQ R      +PNWC +  
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLA---VSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ

Query:  CSREYLDHLFLQCAYT
         S+E ++HLF+ C Y+
Subjt:  CSREYLDHLFLQCAYT

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0932.76Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ
        +I A+  +P  NRG  + LW  + N +F   SVK +     VS    +   +   W +  PKKCKF I       +N  ++LQ R      +PNWC +  
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ

Query:  CSREYLDHLFLQCAYT
         S+E ++HLF+ C Y+
Subjt:  CSREYLDHLFLQCAYT

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-0831.03Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNL---AVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ
        +I A+  +P  +RG  + LW  + N +F   S+K +L   + S    +   +   W +  PKKCKF I       +N  ++LQ R      +PNWC +  
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNL---AVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ

Query:  CSREYLDHLFLQCAYT
         S+E ++HLF+ C Y+
Subjt:  CSREYLDHLFLQCAYT

KAA0067274.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.5e-0933.88Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLAVSSQGI-----YTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVL
        SI  +      NRG  + LW PS + V+SV S K +LA     I     +     + W   +P+KCKF I       LN  + +Q R   +C NPNWC+ 
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLAVSSQGI-----YTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVL

Query:  WQCSREYLDHLFLQCAYTAKF
         + S E ++HLF+ C    +F
Subjt:  WQCSREYLDHLFLQCAYTAKF

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-0932.76Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ
        +I A+  +P  NRG  + LW  + N +F   SVK +     VS    +   +   W +  PKKCKF I       +N  ++LQ R      +PNWC +  
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ

Query:  CSREYLDHLFLQCAYT
         S+E ++HLF+ C Y+
Subjt:  CSREYLDHLFLQCAYT

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.3e-0931.9Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLA---VSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ
        +I A+  +P  NRG  + LW  + N +F   S+K  +A   +S    +   +   W +  PKKCKF I       +N  ++LQ R      +PNWC +  
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLA---VSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ

Query:  CSREYLDHLFLQCAYT
         S+E ++HLF+ C Y+
Subjt:  CSREYLDHLFLQCAYT

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.1e-0831.03Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNL---AVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ
        +I A+  +P  +RG  + LW  + N +F   S+K +L   + S    +   +   W +  PKKCKF I       +N  ++LQ R      +PNWC +  
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNL---AVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ

Query:  CSREYLDHLFLQCAYT
         S+E ++HLF+ C Y+
Subjt:  CSREYLDHLFLQCAYT

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein7.7e-1032.76Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ
        +I A+  +P  NRG  + LW  + N +F   SVK +     VS    +   +   W +  PKKCKF I       +N  ++LQ R      +PNWC +  
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ

Query:  CSREYLDHLFLQCAYT
         S+E ++HLF+ C Y+
Subjt:  CSREYLDHLFLQCAYT

A0A5A7VIU9 LINE-1 retrotransposable element ORF2 protein1.7e-0933.88Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLAVSSQGI-----YTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVL
        SI  +      NRG  + LW PS + V+SV S K +LA     I     +     + W   +P+KCKF I       LN  + +Q R   +C NPNWC+ 
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLAVSSQGI-----YTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVL

Query:  WQCSREYLDHLFLQCAYTAKF
         + S E ++HLF+ C    +F
Subjt:  WQCSREYLDHLFLQCAYTAKF

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein7.7e-1032.76Show/hide
Query:  SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ
        +I A+  +P  NRG  + LW  + N +F   SVK +     VS    +   +   W +  PKKCKF I       +N  ++LQ R      +PNWC +  
Subjt:  SISAAFQSPSENRGFDRSLWLPSQNGVF---SVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLI-------LNRQEKLQHRYHFLCCNPNWCVLWQ

Query:  CSREYLDHLFLQCAYT
         S+E ++HLF+ C Y+
Subjt:  CSREYLDHLFLQCAYT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTATCTCTGCTGCATTTCAATCTCCATCTGAGAACCGTGGTTTCGATAGATCCCTTTGGCTGCCATCACAAAATGGAGTTTTCTCTGTCAAATCTATGAAATTCAACCT
TGCTGTCTCCTCTCAAGGCATATATACAGGTTTCTTTACCAATTTTTGGTACTTGCTTCTGCCCAAAAAATGTAAATTCCTCATACTCAATAGACAAGAAAAGCTTCAAC
ATAGGTATCATTTTCTTTGTTGCAATCCAAATTGGTGTGTATTATGGCAGTGCTCTCGGGAATATTTGGACCATCTTTTTCTCCAATGTGCTTACACTGCCAAATTT
mRNA sequenceShow/hide mRNA sequence
AGTATCTCTGCTGCATTTCAATCTCCATCTGAGAACCGTGGTTTCGATAGATCCCTTTGGCTGCCATCACAAAATGGAGTTTTCTCTGTCAAATCTATGAAATTCAACCT
TGCTGTCTCCTCTCAAGGCATATATACAGGTTTCTTTACCAATTTTTGGTACTTGCTTCTGCCCAAAAAATGTAAATTCCTCATACTCAATAGACAAGAAAAGCTTCAAC
ATAGGTATCATTTTCTTTGTTGCAATCCAAATTGGTGTGTATTATGGCAGTGCTCTCGGGAATATTTGGACCATCTTTTTCTCCAATGTGCTTACACTGCCAAATTT
Protein sequenceShow/hide protein sequence
SISAAFQSPSENRGFDRSLWLPSQNGVFSVKSMKFNLAVSSQGIYTGFFTNFWYLLLPKKCKFLILNRQEKLQHRYHFLCCNPNWCVLWQCSREYLDHLFLQCAYTAKF