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MS000334 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000334
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S20
Genome locationscaffold44:980934..982058
RNA-Seq ExpressionMS000334
SyntenyMS000334
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR005729 - Ribosomal protein S10, eukaryotic/archaeal
IPR018268 - Ribosomal protein S10, conserved site
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600158.1 Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia]4.6e-5897.54Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEDTQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

XP_004143650.1 40S ribosomal protein S20-2 [Cucumis sativus]1.8e-5797.52Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLED QEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

XP_004148131.3 40S ribosomal protein S20-2 [Cucumis sativus]1.3e-5797.54Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEDTQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

XP_008439109.1 PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]4.6e-5897.54Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEDTQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

XP_022141057.1 40S ribosomal protein S20-2-like [Momordica charantia]8.4e-60100Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

TrEMBL top hitse value%identityAlignment
A0A1S3AXJ9 40S ribosomal protein S20-2-like2.2e-5897.54Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEDTQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A5A7VKH9 40S ribosomal protein S20-2-like2.2e-5897.54Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEDTQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A6J1CIS5 40S ribosomal protein S20-2-like4.1e-60100Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A6J1FSX5 40S ribosomal protein S20-2-like2.2e-5897.54Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEDTQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A6J1IAH1 40S ribosomal protein S20-2-like2.2e-5897.54Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAYAAMK TKPGLEDTQEQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

SwissProt top hitse value%identityAlignment
P35686 40S ribosomal protein S206.3e-5083.74Show/hide
Query:  MAYA-AMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD
        +AYA  MKS K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVL+ITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSAD
Subjt:  MAYA-AMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSAD

Query:  VVKQITSITIEPGVEVEVTIADQ
        VVKQITSITIEPGVEVEVTI+DQ
Subjt:  VVKQITSITIEPGVEVEVTIADQ

P49200 40S ribosomal protein S20-11.9e-5490.83Show/hide
Query:  AYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MK  K GLE+  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

P60866 40S ribosomal protein S203.1e-4169.23Show/hide
Query:  AMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI
        A K T     + +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQI
Subjt:  AMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI

Query:  TSITIEPGVEVEVTIAD
        TSI+IEPGVEVEVTIAD
Subjt:  TSITIEPGVEVEVTIAD

Q3ZBH8 40S ribosomal protein S203.1e-4169.23Show/hide
Query:  AMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI
        A K T     + +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQI
Subjt:  AMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQI

Query:  TSITIEPGVEVEVTIAD
        TSI+IEPGVEVEVTIAD
Subjt:  TSITIEPGVEVEVTIAD

Q9STY6 40S ribosomal protein S20-22.2e-5591.74Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

Arabidopsis top hitse value%identityAlignment
AT3G45030.1 Ribosomal protein S10p/S20e family protein1.3e-5590.83Show/hide
Query:  AYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MK  K GLE+  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

AT3G47370.1 Ribosomal protein S10p/S20e family protein1.6e-5691.74Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.2 Ribosomal protein S10p/S20e family protein1.6e-5691.74Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.3 Ribosomal protein S10p/S20e family protein1.6e-5691.74Show/hide
Query:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV
        MAY  MK TK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DV
Subjt:  MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT5G62300.1 Ribosomal protein S10p/S20e family protein1.3e-5590.83Show/hide
Query:  AYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV
        AY  MK  K GLE+  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVV
Subjt:  AYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTACGCAGCGATGAAATCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCCAAAAATGTTAAGAACCTGGAGAA
AGTTTGCACCGACTTGGTTCGCGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCTACCAAGGTTCTTAACATTACAACCAGAAAATCTCCATGTG
GTGAAGGTACCAACACATGGGACAGATTTGAGCTTCGTGTCCACAAACGAGTTATCGACCTATTCAGCTCTGCAGATGTGGTGAAGCAGATTACCTCCATCACCATTGAA
CCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTACGCAGCGATGAAATCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCCAAAAATGTTAAGAACCTGGAGAA
AGTTTGCACCGACTTGGTTCGCGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCTACCAAGGTTCTTAACATTACAACCAGAAAATCTCCATGTG
GTGAAGGTACCAACACATGGGACAGATTTGAGCTTCGTGTCCACAAACGAGTTATCGACCTATTCAGCTCTGCAGATGTGGTGAAGCAGATTACCTCCATCACCATTGAA
CCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAA
Protein sequenceShow/hide protein sequence
MAYAAMKSTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIE
PGVEVEVTIADQ