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MS000372 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000372
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLysM domain-containing protein
Genome locationscaffold44:1251974..1252345
RNA-Seq ExpressionMS000372
SyntenyMS000372
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576752.1 hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia]2.8e-4275Show/hide
Query:  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADD-GRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV
        R+G PSSR   DVVSWYCA+ +L LILIGSIRE++ S+ +ADD G++ RGNL+ GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLV
Subjt:  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADD-GRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLV

Query:  IKIISSSNPSNSGLET
        IKIISS NP   G +T
Subjt:  IKIISSSNPSNSGLET

KGN57357.2 hypothetical protein Csa_009741 [Cucumis sativus]2.6e-4074.79Show/hide
Query:  MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        M G    R R    SSRP  DVVSWYCAVG+L LILIGSIRE++ S     DGRL RGNLV  RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDP
Subjt:  MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIISSSNPSN
        DDVFPGLVIKII+SS   N
Subjt:  DDVFPGLVIKIISSSNPSN

XP_008439155.1 PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]1.2e-4076.52Show/hide
Query:  PTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVF
        P  R    + SSRP  DVVSWYCAVG+L LILIGSIRE++ S+G  D GR  RGNLV  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVF
Subjt:  PTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVF

Query:  PGLVIKIISSSNPSN
        PGLVIKII+SS  +N
Subjt:  PGLVIKIISSSNPSN

XP_022157015.1 uncharacterized protein LOC111023841 [Momordica charantia]1.2e-64100Show/hide
Query:  MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
Subjt:  MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIISSSNPSNSGLET
        DDVFPGLVIKIISSSNPSNSGLET
Subjt:  DDVFPGLVIKIISSSNPSNSGLET

XP_022985106.1 uncharacterized protein LOC111483184 [Cucurbita maxima]1.8e-4174.78Show/hide
Query:  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI
        R+  PSSR   DVVSWYCAV +L LILIGSIRE++ SA A D  ++ RGNL+ GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVI
Subjt:  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI

Query:  KIISSSNPSNSGLET
        KIISS NP   G +T
Subjt:  KIISSSNPSNSGLET

TrEMBL top hitse value%identityAlignment
A0A0A0L5R9 LysM domain-containing protein1.3e-4074.79Show/hide
Query:  MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        M G    R R    SSRP  DVVSWYCAVG+L LILIGSIRE++ S     DGRL RGNLV  RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDP
Subjt:  MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIISSSNPSN
        DDVFPGLVIKII+SS   N
Subjt:  DDVFPGLVIKIISSSNPSN

A0A1S3AXP2 uncharacterized protein LOC1034840365.6e-4176.52Show/hide
Query:  PTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVF
        P  R    + SSRP  DVVSWYCAVG+L LILIGSIRE++ S+G  D GR  RGNLV  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVF
Subjt:  PTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVF

Query:  PGLVIKIISSSNPSN
        PGLVIKII+SS  +N
Subjt:  PGLVIKIISSSNPSN

A0A5A7VAP9 Peptidoglycan-binding LysM domain-containing protein5.6e-4176.52Show/hide
Query:  PTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVF
        P  R    + SSRP  DVVSWYCAVG+L LILIGSIRE++ S+G  D GR  RGNLV  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVF
Subjt:  PTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVF

Query:  PGLVIKIISSSNPSN
        PGLVIKII+SS  +N
Subjt:  PGLVIKIISSSNPSN

A0A6J1DRZ3 uncharacterized protein LOC1110238415.6e-65100Show/hide
Query:  MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
Subjt:  MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIISSSNPSNSGLET
        DDVFPGLVIKIISSSNPSNSGLET
Subjt:  DDVFPGLVIKIISSSNPSNSGLET

A0A6J1J769 uncharacterized protein LOC1114831848.7e-4274.78Show/hide
Query:  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI
        R+  PSSR   DVVSWYCAV +L LILIGSIRE++ SA A D  ++ RGNL+ GR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVI
Subjt:  RSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI

Query:  KIISSSNPSNSGLET
        KIISS NP   G +T
Subjt:  KIISSSNPSNSGLET

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.7e-2148.6Show/hide
Query:  GAPSSRPQTDVVSWYCAVGMLALILIGSIR----ESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL
        G  SS    + +SWYCAV    ++L+ S +     ST          +  G   R   CDEIY V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL
Subjt:  GAPSSRPQTDVVSWYCAVGMLALILIGSIR----ESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL

Query:  VIKIISS
        +I+I  S
Subjt:  VIKIISS

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein1.7e-2657.73Show/hide
Query:  QTDVVSWYCAVGMLALILIGSIREST-YSAGAADDGR---LARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        +++ V+ YC V +L L L GS++ S    +G    GR   + RG  +  RPC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Subjt:  QTDVVSWYCAVGMLALILIGSIREST-YSAGAADDGR---LARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein9.2e-2861.96Show/hide
Query:  TDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        +D+ +W  AV +L+LIL+ S+RE+  S          RG+    +PC+EIY+VGEGETLHTI DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Subjt:  TDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGGCTCTCCGACCAGAAGAATTAGAAGTGGGGCTCCCTCTTCACGGCCCCAAACCGACGTCGTCTCATGGTACTGCGCCGTGGGCATGCTGGCCTTGATCTTGAT
CGGGTCGATCAGAGAAAGCACCTACTCCGCCGGCGCCGCCGATGACGGCCGGCTGGCCAGAGGAAACTTGGTCAGGGGGCGGCCGTGCGACGAGATATACGTGGTCGGAG
AAGGGGAAACGCTGCACACCATCAGCGACAAGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGCTTGGTCATCAAA
ATCATCTCCTCCTCCAACCCTTCCAACTCCGGATTAGAAACC
mRNA sequenceShow/hide mRNA sequence
ATGGACGGCTCTCCGACCAGAAGAATTAGAAGTGGGGCTCCCTCTTCACGGCCCCAAACCGACGTCGTCTCATGGTACTGCGCCGTGGGCATGCTGGCCTTGATCTTGAT
CGGGTCGATCAGAGAAAGCACCTACTCCGCCGGCGCCGCCGATGACGGCCGGCTGGCCAGAGGAAACTTGGTCAGGGGGCGGCCGTGCGACGAGATATACGTGGTCGGAG
AAGGGGAAACGCTGCACACCATCAGCGACAAGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGCTTGGTCATCAAA
ATCATCTCCTCCTCCAACCCTTCCAACTCCGGATTAGAAACC
Protein sequenceShow/hide protein sequence
MDGSPTRRIRSGAPSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIK
IISSSNPSNSGLET