CuGenDBv2

Gene ID	MS000383
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1
Genome location	scaffold44:1332347..1335367
RNA-Seq Expression	MS000383
Synteny	MS000383
Gene Ontology terms	GO:0010190 - cytochrome b6f complex assembly (biological process)
InterPro domains	IPR021325 - Cofactor assembly of complex C subunit B, CCB2/CCB4 IPR044970 - COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574156.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.3e-131

84.67

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Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        M+ +ILSP+PLIRL+ST RFRAK   K+P ++ARLDDSKNS N+QLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHF GSNSAAP T AQLRTEA
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
        LG+SLAAFSIALPYLGKFL+GAVPSGEA+LPEG EQIFVLSQ+VSDNVK+DLAWATYILLRNTNSISVLIQI+GELCVRGYWNSPNDI GADL+AWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDI
        LQSIGLSALND LYFPQIS+S LW+MLP GTRSVLVQPV     QSGN+MEKIGGFIL+ASSLSYAFSDKDRAWIRALA KF + D+
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDI

XP_022141087.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Momordica charantia]

8.6e-156

99.65

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Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        MTGSILSPNPLIRLTSTPRFRAKTR KAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
        LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
        LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL

XP_022141091.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X2 [Momordica charantia]

1.2e-138

91.2

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Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        MTGSILSPNPLIRLTSTPRFRAKTR KAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQL    
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
                            GAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
        LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL

XP_022945332.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata]

1.9e-131

84.67

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Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        M+ +ILSP+PLIRL+STPRFRAK   K+P ++ARLDDSKNS ++QLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHF GS+SAAP T AQLRTEA
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
        LG+SLAAFSIALPYLGKFL+GAVPSGEA+LPEG EQIFVLSQ+VSDNVK+DLAWATYILLRNTNSISVLIQI+GELCVRGYWNSPNDI GADL+AWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDI
        LQSIGLSALND LYFPQIS+S LW+MLP GTRSVLVQPV     QSGN+MEKIGGFIL+ASSLSYAFSDKDRAWIRALA KF + DI
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDI

XP_023542853.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo]

1.1e-131

85.02

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Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        M+ +ILSP+PLIRL+ST RFRAK   K+P ++ARLDDSKNS N+QLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHF GSNSAAP T AQLRTEA
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
        LG+SLAAFSIALPYLGKFL+GAVPSGEA+LPEG EQIFVLSQNVSDNVK+DLAWATYILLRNTNSISVLIQI+GELCVRGYWNSPNDI G DL+AWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDI
        LQSIGLSALND LYFPQIS+S LW+MLP GTRSVLVQPV     QSGN+MEKIGGFIL+ASSLSYAFSDKDRAWIRALA KF + DI
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDI

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DSW9 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1

1.6e-131

85.42

Show/hide

Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        M  SI SP+PL +LTS   FRAK++ KAPA+SARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHF GSNSAA TTPAQLRTEA
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
        LG+SLAAFSIALPYLGKFLKGAVPSGEA+LPEGTEQIF+LSQ VSDN+KED+AWATYILLRNTNSISVLIQ +G LCVRGYWNSPNDI  ADL+AWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
        LQSIGLSAL D +YFPQIS+S LW+MLP GTRSVLVQPV    KQSGN+MEK+GGFILLASSLSYAFSDKDRAWIRALANKF DR IL
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL

A0A5A7SUJ0 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2

1.6e-131

85.42

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Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        M  SI SP+PL +LTS   FRAK++ KAPA+SARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHF GSNSAA TTPAQLRTEA
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
        LG+SLAAFSIALPYLGKFLKGAVPSGEA+LPEGTEQIF+LSQ VSDN+KED+AWATYILLRNTNSISVLIQ +G LCVRGYWNSPNDI  ADL+AWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
        LQSIGLSAL D +YFPQIS+S LW+MLP GTRSVLVQPV    KQSGN+MEK+GGFILLASSLSYAFSDKDRAWIRALANKF DR IL
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL

A0A6J1CHZ5 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X2

6.0e-139

91.2

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Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        MTGSILSPNPLIRLTSTPRFRAKTR KAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQL    
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
                            GAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
        LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL

A0A6J1CJH9 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1

4.1e-156

99.65

Show/hide

Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        MTGSILSPNPLIRLTSTPRFRAKTR KAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
        LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
        LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL

A0A6J1G0N4 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic

9.3e-132

84.67

Show/hide

Query:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA
        M+ +ILSP+PLIRL+STPRFRAK   K+P ++ARLDDSKNS ++QLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHF GS+SAAP T AQLRTEA
Subjt:  MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEA

Query:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ
        LG+SLAAFSIALPYLGKFL+GAVPSGEA+LPEG EQIFVLSQ+VSDNVK+DLAWATYILLRNTNSISVLIQI+GELCVRGYWNSPNDI GADL+AWFEEQ
Subjt:  LGLSLAAFSIALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQ

Query:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDI
        LQSIGLSALND LYFPQIS+S LW+MLP GTRSVLVQPV     QSGN+MEKIGGFIL+ASSLSYAFSDKDRAWIRALA KF + DI
Subjt:  LQSIGLSALNDDLYFPQISDSELWKMLPNGTRSVLVQPV----KQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDI

SwissProt top hits

e value

%identity

Alignment

Q9FJ81 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic

1.3e-82

57.89

Show/hide

Query:  PRFRAKTR-PKAPAVSARLDD---SKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEALGLSLAAFSIALP
        P+F  + R  ++  + AR ++      +++QQLNLSVLRFT GIPG DESYLPRWIGYGFGSLLLLNHF   +++AP + +Q+R+EALGLSLAAFSIALP
Subjt:  PRFRAKTR-PKAPAVSARLDD---SKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEALGLSLAAFSIALP

Query:  YLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQLQSIGLSALNDDL
        Y+GKFLKG+V   + SLPE  EQ+FV+S N+ D++KEDLAWATY+LLRNT++I+VLI ++GELCVRGYWN P+ +  A L  WF++++  IGL+ + + L
Subjt:  YLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQLQSIGLSALNDDL

Query:  YFPQISDSEL-WKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKF
        YFPQ + S L   +LP+GTRS+ VQP+ Q+ N+ +K+ GF+L+AS+  YA+SDKDRAWI A+A KF
Subjt:  YFPQISDSEL-WKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKF

Arabidopsis top hits

e value

%identity

Alignment

AT5G52110.1 Protein of unknown function (DUF2930)

9.3e-84

57.89

Show/hide

Query:  PRFRAKTR-PKAPAVSARLDD---SKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEALGLSLAAFSIALP
        P+F  + R  ++  + AR ++      +++QQLNLSVLRFT GIPG DESYLPRWIGYGFGSLLLLNHF   +++AP + +Q+R+EALGLSLAAFSIALP
Subjt:  PRFRAKTR-PKAPAVSARLDD---SKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEALGLSLAAFSIALP

Query:  YLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQLQSIGLSALNDDL
        Y+GKFLKG+V   + SLPE  EQ+FV+S N+ D++KEDLAWATY+LLRNT++I+VLI ++GELCVRGYWN P+ +  A L  WF++++  IGL+ + + L
Subjt:  YLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQLQSIGLSALNDDL

Query:  YFPQISDSEL-WKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKF
        YFPQ + S L   +LP+GTRS+ VQP+ Q+ N+ +K+ GF+L+AS+  YA+SDKDRAWI A+A KF
Subjt:  YFPQISDSEL-WKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKF

AT5G52110.2 Protein of unknown function (DUF2930)

9.3e-84

57.89

Show/hide

Query:  PRFRAKTR-PKAPAVSARLDD---SKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEALGLSLAAFSIALP
        P+F  + R  ++  + AR ++      +++QQLNLSVLRFT GIPG DESYLPRWIGYGFGSLLLLNHF   +++AP + +Q+R+EALGLSLAAFSIALP
Subjt:  PRFRAKTR-PKAPAVSARLDD---SKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEALGLSLAAFSIALP

Query:  YLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQLQSIGLSALNDDL
        Y+GKFLKG+V   + SLPE  EQ+FV+S N+ D++KEDLAWATY+LLRNT++I+VLI ++GELCVRGYWN P+ +  A L  WF++++  IGL+ + + L
Subjt:  YLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQLQSIGLSALNDDL

Query:  YFPQISDSEL-WKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKF
        YFPQ + S L   +LP+GTRS+ VQP+ Q+ N+ +K+ GF+L+AS+  YA+SDKDRAWI A+A KF
Subjt:  YFPQISDSEL-WKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACCGGCTCAATTCTCTCTCCCAACCCGTTAATTCGGTTGACATCCACTCCCCGATTTCGCGCTAAAACTAGGCCGAAGGCTCCAGCAGTTTCTGCTCGTCTCGACGA
TTCTAAGAACTCGGCTAATCAGCAACTTAATCTCTCTGTCCTTCGATTCACGCTCGGGATTCCTGGATTGGACGAGTCTTACTTACCCAGATGGATCGGTTATGGATTTG
GTTCACTTCTTCTCCTGAACCACTTTTTTGGTTCGAATTCAGCTGCTCCCACCACCCCAGCGCAGTTAAGGACTGAGGCTTTAGGCCTTTCCTTGGCAGCATTTTCTATT
GCACTCCCCTACTTGGGAAAGTTTCTTAAGGGTGCAGTTCCATCAGGCGAAGCTAGCCTCCCTGAAGGCACTGAGCAAATATTTGTCCTGTCTCAAAATGTATCGGATAA
TGTAAAGGAAGACTTGGCTTGGGCAACATACATCTTGCTGCGCAATACAAATAGTATATCTGTGTTAATACAAATTCGAGGGGAATTATGTGTTCGAGGATACTGGAATA
GTCCAAATGATATATGCGGAGCAGATTTAGTTGCCTGGTTTGAGGAGCAGCTTCAGAGCATTGGTCTGTCTGCATTAAATGATGACCTCTATTTCCCTCAGATTTCAGAT
TCTGAACTCTGGAAAATGCTGCCCAATGGCACTCGCTCAGTTTTAGTACAGCCAGTGAAACAAAGTGGCAACAAGATGGAAAAGATTGGTGGATTCATATTGCTGGCTTC
GAGTTTAAGTTATGCCTTTAGCGACAAAGACAGAGCCTGGATAAGAGCTCTTGCAAACAAGTTCATAGATAGGGACATACTC

mRNA sequence

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Protein sequence

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MTGSILSPNPLIRLTSTPRFRAKTRPKAPAVSARLDDSKNSANQQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFFGSNSAAPTTPAQLRTEALGLSLAAFSI
ALPYLGKFLKGAVPSGEASLPEGTEQIFVLSQNVSDNVKEDLAWATYILLRNTNSISVLIQIRGELCVRGYWNSPNDICGADLVAWFEEQLQSIGLSALNDDLYFPQISD
SELWKMLPNGTRSVLVQPVKQSGNKMEKIGGFILLASSLSYAFSDKDRAWIRALANKFIDRDIL

MS000383 (gene) of Bitter gourd (TR) v1 genome