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MS000414 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000414
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L36
Genome locationscaffold44:1541338..1542139
RNA-Seq ExpressionMS000414
SyntenyMS000414
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000509 - Ribosomal protein L36e
IPR038097 - Ribosomal protein L36e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5560697.1 hypothetical protein DKX38_005654 [Salix brachista]1.8e-4498.02Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPNSGLFVGLNKGH+VTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

KAF9683668.1 hypothetical protein SADUNF_Sadunf04G0037700 [Salix dunnii]2.4e-4499.01Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

XP_002305746.1 60S ribosomal protein L36-2 [Populus trichocarpa]4.1e-4497.03Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPN+GLFVGLNKGH+VTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

XP_022140912.1 60S ribosomal protein L36-2-like [Momordica charantia]6.3e-45100Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

XP_022155584.1 60S ribosomal protein L36-2-like [Momordica charantia]1.8e-4498.02Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPN+GLFVGLNKGH+VTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

TrEMBL top hitse value%identityAlignment
A0A5N5N0C2 60S ribosomal protein L368.9e-4598.02Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPNSGLFVGLNKGH+VTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

A0A6J1CID5 60S ribosomal protein L363.1e-45100Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

A0A6J1DQP8 60S ribosomal protein L368.9e-4598.02Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPN+GLFVGLNKGH+VTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

A0A6N2N9L4 60S ribosomal protein L368.9e-4598.02Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPNSGLFVGLNKGH+VTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

A9PCN6 60S ribosomal protein L362.0e-4497.03Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        MAPKQPN+GLFVGLNKGH+VTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

SwissProt top hitse value%identityAlignment
O80929 60S ribosomal protein L36-17.0e-3988.3Show/hide
Query:  SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR
        +GLFVGLNKGHVVT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR
Subjt:  SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR

P52866 60S ribosomal protein L364.4e-3381.32Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE
        MAPKQPN+GLFVGLNKGH+VTKKELAPRPSDRKGKTSKR  FVR+LIREVAGF PYEKRITELLKVGKDKRALKV + K+G H +  K+ E
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKRE

Q9LRB8 60S ribosomal protein L362.1e-2773.33Show/hide
Query:  VGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR
        VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KKKREEM+ VLRKM+
Subjt:  VGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR

Q9LZ57 60S ribosomal protein L36-31.7e-3786.17Show/hide
Query:  SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR
        +GLFVGLNKGHVVTK+E  PRP++RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR
Subjt:  SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR

Q9M352 60S ribosomal protein L36-29.2e-3983.17Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        M   Q  +GLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

Arabidopsis top hitse value%identityAlignment
AT2G37600.1 Ribosomal protein L36e family protein5.0e-4088.3Show/hide
Query:  SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR
        +GLFVGLNKGHVVT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR
Subjt:  SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR

AT2G37600.2 Ribosomal protein L36e family protein5.0e-4088.3Show/hide
Query:  SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR
        +GLFVGLNKGHVVT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR
Subjt:  SGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR

AT3G53740.2 Ribosomal protein L36e family protein6.5e-4083.17Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        M   Q  +GLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

AT3G53740.3 Ribosomal protein L36e family protein6.5e-4083.17Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        M   Q  +GLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R

AT3G53740.4 Ribosomal protein L36e family protein6.5e-4083.17Show/hide
Query:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM
        M   Q  +GLFVGLNKGHVVT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKM
Subjt:  MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKM

Query:  R
        R
Subjt:  R


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGAAGCAGCCGAATTCTGGTCTCTTTGTTGGACTTAACAAAGGCCATGTTGTTACAAAGAAAGAGTTGGCTCCACGCCCCTCAGATCGTAAAGGAAAAACTAG
CAAAAGAGTTCTCTTTGTGAGGAGCTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAA
AAGTAGCTAAAAGAAAGCTCGGAACTCACAAGAGGGCTAAGAAGAAGAGAGAAGAGATGTCGAGTGTTCTCCGCAAGATGAGG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCGAAGCAGCCGAATTCTGGTCTCTTTGTTGGACTTAACAAAGGCCATGTTGTTACAAAGAAAGAGTTGGCTCCACGCCCCTCAGATCGTAAAGGAAAAACTAG
CAAAAGAGTTCTCTTTGTGAGGAGCTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAA
AAGTAGCTAAAAGAAAGCTCGGAACTCACAAGAGGGCTAAGAAGAAGAGAGAAGAGATGTCGAGTGTTCTCCGCAAGATGAGG
Protein sequenceShow/hide protein sequence
MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR