CuGenDBv2

Gene ID	MS000425
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	rRNA 2'-O-methyltransferase fibrillarin 2
Genome location	scaffold44:1619255..1619434
RNA-Seq Expression	MS000425
Synteny	MS000425
Gene Ontology terms	GO:0000494 - box C/D snoRNA 3'-end processing (biological process) GO:1990258 - histone glutamine methylation (biological process) GO:0051321 - meiotic cell cycle (biological process) GO:0051225 - spindle assembly (biological process) GO:0031167 - rRNA methylation (biological process) GO:0031122 - cytoplasmic microtubule organization (biological process) GO:0007020 - microtubule nucleation (biological process) GO:0000278 - mitotic cell cycle (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005874 - microtubule (cellular component) GO:0005730 - nucleolus (cellular component) GO:0000930 - gamma-tubulin complex (cellular component) GO:0031428 - box C/D snoRNP complex (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0000923 - equatorial microtubule organizing center (cellular component) GO:0000922 - spindle pole (cellular component) GO:0008649 - rRNA methyltransferase activity (molecular function) GO:0003723 - RNA binding (molecular function) GO:0043015 - gamma-tubulin binding (molecular function) GO:0051011 - microtubule minus-end binding (molecular function) GO:1990259 - histone-glutamine methyltransferase activity (molecular function)
InterPro domains	IPR000692 - Fibrillarin

Homology

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GenBank top hits

e value

%identity

Alignment

KGN57431.2 hypothetical protein Csa_009607 [Cucumis sativus]

2.2e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

XP_004143621.2 probable mediator of RNA polymerase II transcription subunit 36b [Cucumis sativus]

2.2e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

XP_022922917.1 probable mediator of RNA polymerase II transcription subunit 36b [Cucurbita moschata]

2.2e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

XP_023552409.1 mediator of RNA polymerase II transcription subunit 36a-like [Cucurbita pepo subsp. pepo]

2.2e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

XP_038875959.1 rRNA 2'-O-methyltransferase fibrillarin 1-like [Benincasa hispida]

2.2e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KLF9 Uncharacterized protein

1.1e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

A0A0A0L9V7 Uncharacterized protein

1.1e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

A0A5D3CYG2 Mediator of RNA polymerase II transcription subunit 36a-like

1.1e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

A0A6J1E4P7 probable mediator of RNA polymerase II transcription subunit 36b

1.1e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

A0A6J1JA27 probable mediator of RNA polymerase II transcription subunit 36b

1.1e-21

89.83

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTVPAE VFASEVNKLKADQFKP E+VTLEPFERDHACVVGIY+APKKQK AA
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

SwissProt top hits

e value

%identity

Alignment

P35549 rRNA 2'-O-methyltransferase fibrillarin

5.5e-15

66.07

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQK
        +ANCIDST+ A  V ASE+NKLK D+ KP+E+V+LEPFERDHA VVG+Y+  KK K
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQK

Q22053 rRNA 2'-O-methyltransferase fibrillarin

9.4e-15

63.16

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKL
        +ANCIDST   E VFA EVNKLK ++FKP+E+VTLEP+ERDHA VV +Y+  K +K+
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKL

Q80WS3 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1

2.1e-14

64.29

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQK
        +ANCIDST  AE VFASEV KL+ +  KP E++TLEP+ERDHA VVG+Y+ P K K
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQK

Q94AH9 rRNA 2'-O-methyltransferase fibrillarin 2

1.8e-18

74.14

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLA
        +ANCIDSTVPAE VF +EV KL+ +QFKP E+VTLEPFERDHACVVG Y+ PKK K A
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLA

Q9FEF8 rRNA 2'-O-methyltransferase fibrillarin 1

1.8e-18

74.58

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTV AE VF SEV KL+ +QFKP E+VTLEPFERDHACVVG Y+ PKKQK  A
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

Arabidopsis top hits

e value

%identity

Alignment

AT4G25630.1 fibrillarin 2

1.3e-19

74.14

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLA
        +ANCIDSTVPAE VF +EV KL+ +QFKP E+VTLEPFERDHACVVG Y+ PKK K A
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLA

AT5G52470.1 fibrillarin 1

1.3e-19

74.58

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA
        +ANCIDSTV AE VF SEV KL+ +QFKP E+VTLEPFERDHACVVG Y+ PKKQK  A
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

AT5G52490.1 Fibrillarin family protein

4.6e-09

48.15

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Query:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKK
        +AN IDST+ AETV+  EV KL+ ++ +P E + L+  E  HACV G Y+ P+K
Subjt:  QANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKK

Sequences

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CDS sequence

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TTTCAAGCTAACTGCATTGATTCAACAGTTCCAGCAGAGACAGTGTTTGCAAGTGAGGTGAATAAGTTAAAGGCAGATCAATTCAAACCCATCGAGCGAGTAACTCTTGA
ACCATTTGAACGAGATCATGCTTGTGTTGTCGGTATCTATCAGGCGCCAAAGAAACAGAAGCTCGCTGCA

mRNA sequence

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TTTCAAGCTAACTGCATTGATTCAACAGTTCCAGCAGAGACAGTGTTTGCAAGTGAGGTGAATAAGTTAAAGGCAGATCAATTCAAACCCATCGAGCGAGTAACTCTTGA
ACCATTTGAACGAGATCATGCTTGTGTTGTCGGTATCTATCAGGCGCCAAAGAAACAGAAGCTCGCTGCA

Protein sequence

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FQANCIDSTVPAETVFASEVNKLKADQFKPIERVTLEPFERDHACVVGIYQAPKKQKLAA

MS000425 (gene) of Bitter gourd (TR) v1 genome