CuGenDBv2

Gene ID	MS000442
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Sterol regulatory element-binding protein cleavage-activating protein, putative
Genome location	scaffold44:1700912..1701463
RNA-Seq Expression	MS000442
Synteny	MS000442
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR021855 - PAM68-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574203.1 putative protein PAM68-like protein, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-74

75.53

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS----SNDDDDEIPEAVSNRIITRI
        MKAL+CS+R ALHLS+PPPWK RSRI+DST TKNL   +R +RG +++NAKGFTG+PATAK+RE A +K SGQNNS      DDDDEIPEAV+ RIITRI
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS----SNDDDDEIPEAVSNRIITRI

Query:  LAFVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        LAFVG+PMAFGV L+KI E + EQK+W VPIWLPFLT FLTFGAST+GIAYGTLS SLDPEKEG+LFGW+EAQKNWVEMWKEEDEA+R
Subjt:  LAFVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

XP_022140980.1 uncharacterized protein PAM68-like [Momordica charantia]

2.9e-96

99.46

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAFV
        MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEI EAVSNRIITRILAFV
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAFV

Query:  GVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        GVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
Subjt:  GVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

XP_022944901.1 uncharacterized protein PAM68-like [Cucurbita moschata]

4.1e-74

76.34

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS--SNDDDDEIPEAVSNRIITRILA
        MKAL+CS+R ALHLS+PPPWK RSRI+DST TKNL   +R +RG +++NAKGFTG+PATAK+RE A +K SGQNNS     DDDEIPEAV+ RIITRILA
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS--SNDDDDEIPEAVSNRIITRILA

Query:  FVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        FVGVPMAFGV L+KI E + EQK+W VPIWLPFLT FLTFGAST+GIAYGTLS SLDPEKEG+LFGW+EAQKNWVEMWKEEDEA+R
Subjt:  FVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

XP_023541387.1 uncharacterized protein PAM68-like [Cucurbita pepo subsp. pepo]

5.9e-73

75.4

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS---SNDDDDEIPEAVSNRIITRIL
        MKAL+CS+R AL LS+PPPWK RSRI+DST TKNL   +R +RG +++NAKGFTG+PATAK+RE A +K SGQNNS      DDDEIPEAV+ RIITRIL
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS---SNDDDDEIPEAVSNRIITRIL

Query:  AFVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        AFVGVPMAFGV L+KI E + EQK+W VPIWLPFLT FLTFGAST+GIAYGTLS SLDPEKEG+LFGW+EAQKNWVEMWKEEDEA+R
Subjt:  AFVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

XP_038877436.1 uncharacterized protein PAM68-like [Benincasa hispida]

6.1e-78

79.89

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAFV
        MKAL+CS+ QAL LS+PPPW  RSRINDSTITK L+N +RI+RG V+VNAKGF+G+P+TAK+RE  A+K+SGQNN   DDDDEIPEAV +RIITRILAFV
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAFV

Query:  GVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        GVPMAFGV LLKIF+ IKEQ VWDVPIWLPFLTTFLTFGAST+GIAYGTLS SLDPEK+GS+FGWEEAQKNWVEMWKEEDE +R
Subjt:  GVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AZ57 uncharacterized protein PAM68-like

2.3e-70

75.14

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Query:  MKALLCSYRQALHLSEPPPWKPRS-RINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAF
        MK+  CS+RQAL L +PPP   R+  INDSTITKNL+N +  +RG V+VNAKGFTG+PATAK RE AA+ +SGQNN + DDDDEIPEAV +RIITRILAF
Subjt:  MKALLCSYRQALHLSEPPPWKPRS-RINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAF

Query:  VGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        VG+PMAFGV LLKIF+ IKEQ +WDVPIW+PF TTFLTFGAST+GIAYGTLS SLDPEK+GS+ GWEEAQKNWVEMWKEEDE SR
Subjt:  VGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

A0A5A7STB5 Putative Sterol regulatory element-binding protein cleavage-activating protein

2.3e-70

75.14

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Query:  MKALLCSYRQALHLSEPPPWKPRS-RINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAF
        MK+  CS+RQAL L +PPP   R+  INDSTITKNL+N +  +RG V+VNAKGFTG+PATAK RE AA+ +SGQNN + DDDDEIPEAV +RIITRILAF
Subjt:  MKALLCSYRQALHLSEPPPWKPRS-RINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAF

Query:  VGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        VG+PMAFGV LLKIF+ IKEQ +WDVPIW+PF TTFLTFGAST+GIAYGTLS SLDPEK+GS+ GWEEAQKNWVEMWKEEDE SR
Subjt:  VGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

A0A6J1CGP3 uncharacterized protein PAM68-like

1.4e-96

99.46

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAFV
        MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEI EAVSNRIITRILAFV
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAFV

Query:  GVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        GVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
Subjt:  GVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

A0A6J1FZC0 uncharacterized protein PAM68-like

2.0e-74

76.34

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS--SNDDDDEIPEAVSNRIITRILA
        MKAL+CS+R ALHLS+PPPWK RSRI+DST TKNL   +R +RG +++NAKGFTG+PATAK+RE A +K SGQNNS     DDDEIPEAV+ RIITRILA
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS--SNDDDDEIPEAVSNRIITRILA

Query:  FVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        FVGVPMAFGV L+KI E + EQK+W VPIWLPFLT FLTFGAST+GIAYGTLS SLDPEKEG+LFGW+EAQKNWVEMWKEEDEA+R
Subjt:  FVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

A0A6J1HYL3 uncharacterized protein PAM68-like

9.1e-72

74.05

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS-SNDDDDEIPEAVSNRIITRILAF
        MKAL+CS+R AL LS+PPPWK RSRI++ST TKNL   +  +RG +++NAKGFTG+PATAK+RE A +K+S QNNS    DDDEIPEAV+ RIITRILAF
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNS-SNDDDDEIPEAVSNRIITRILAF

Query:  VGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR
        VG+PMAFGV L+KI E + EQK+W VPIWLPFLT FLTFGAST+GIAYGTLS SLDPEKEG+LFGW+EAQKNWVEMWKEEDEA+R
Subjt:  VGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

SwissProt top hits

e value

%identity

Alignment

O49668 Protein PAM68, chloroplastic

1.4e-21

36.99

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Query:  KPRSRINDSTITKNLTNLSRIARGDVRVNA-KGFTGTPATAKEREAAARKISGQNNSSNDDDDE---------------IPEAVSNRIITRILAFVGVPM
        K +S++  S    N   +SRIA     +N+ KGF   P   K+    ++K    N S  DDDDE               IPE V+NR+I+R+   VG+P+
Subjt:  KPRSRINDSTITKNLTNLSRIARGDVRVNA-KGFTGTPATAKEREAAARKISGQNNSSNDDDDE---------------IPEAVSNRIITRILAFVGVPM

Query:  AFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWK
          G+     F  +K     DVP W+PF+ +F+ FG +  G++YG +S+S DP +EGSL GW EA+KNW   W+
Subjt:  AFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWK

Q9LTD9 Uncharacterized protein PAM68-like

1.3e-30

42.08

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNL--SRIARGDVRVNA--KGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRI
        M+ALLCS+R         P    SR    T + N   L  +   R + +++A  KGF  +  + K          G+ +   +DD  IP+ V  R++ RI
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNL--SRIARGDVRVNA--KGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRI

Query:  LAFVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEE
        +  VG P+  GVA+LK+ E +K++ VWDVP+W+P+LTT +TFG+S +GIAYG+LS +LDP K  SLFG +EA++NWVEMWKE+
Subjt:  LAFVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEE

Arabidopsis top hits

e value

%identity

Alignment

AT4G19100.1 Protein of unknown function (DUF3464)

1.0e-22

36.99

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Query:  KPRSRINDSTITKNLTNLSRIARGDVRVNA-KGFTGTPATAKEREAAARKISGQNNSSNDDDDE---------------IPEAVSNRIITRILAFVGVPM
        K +S++  S    N   +SRIA     +N+ KGF   P   K+    ++K    N S  DDDDE               IPE V+NR+I+R+   VG+P+
Subjt:  KPRSRINDSTITKNLTNLSRIARGDVRVNA-KGFTGTPATAKEREAAARKISGQNNSSNDDDDE---------------IPEAVSNRIITRILAFVGVPM

Query:  AFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWK
          G+     F  +K     DVP W+PF+ +F+ FG +  G++YG +S+S DP +EGSL GW EA+KNW   W+
Subjt:  AFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWK

AT5G52780.1 Protein of unknown function (DUF3464)

9.1e-32

42.08

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Query:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNL--SRIARGDVRVNA--KGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRI
        M+ALLCS+R         P    SR    T + N   L  +   R + +++A  KGF  +  + K          G+ +   +DD  IP+ V  R++ RI
Subjt:  MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNL--SRIARGDVRVNA--KGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRI

Query:  LAFVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEE
        +  VG P+  GVA+LK+ E +K++ VWDVP+W+P+LTT +TFG+S +GIAYG+LS +LDP K  SLFG +EA++NWVEMWKE+
Subjt:  LAFVGVPMAFGVALLKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEE

Sequences

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CDS sequence

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ATGAAAGCTCTGTTGTGTTCCTATAGGCAAGCTCTCCACCTCTCGGAGCCTCCGCCATGGAAACCGAGAAGCCGAATCAACGACTCAACAATCACGAAGAATCTCACCAA
TCTCTCAAGAATAGCCAGAGGCGACGTCCGAGTAAACGCCAAGGGCTTCACAGGTACTCCGGCGACGGCGAAAGAAAGAGAAGCTGCCGCAAGGAAAATTTCCGGCCAAA
ACAACAGCAGCAACGACGACGACGATGAAATTCCAGAGGCCGTATCCAACAGGATTATAACGAGAATTTTGGCTTTCGTCGGAGTTCCGATGGCGTTTGGTGTGGCATTG
CTAAAGATTTTCGAGACGATCAAGGAGCAGAAGGTGTGGGATGTGCCGATTTGGCTACCATTTTTGACGACTTTCTTGACGTTCGGAGCTTCGACGATCGGAATCGCGTA
CGGGACGTTATCGGCGAGTTTGGATCCGGAGAAGGAAGGGTCGCTGTTCGGATGGGAGGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAGTC
GC

mRNA sequence

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Protein sequence

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MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATAKEREAAARKISGQNNSSNDDDDEIPEAVSNRIITRILAFVGVPMAFGVAL
LKIFETIKEQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKEEDEASR

MS000442 (gene) of Bitter gourd (TR) v1 genome