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MS000466 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000466
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionarabinogalactan peptide 22-like
Genome locationscaffold44:1897487..1897919
RNA-Seq ExpressionMS000466
SyntenyMS000466
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140891.1 arabinogalactan peptide 22-like [Momordica charantia]1.8e-24100Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

XP_022945187.1 arabinogalactan peptide 22-like [Cucurbita moschata]1.0e-1984.62Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MAV RACFGIYA IIAI +V++LPVSRAEH+SSPAPAP+SDGT IDQGIAYILMLLAL LTYIIH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

XP_022968216.1 arabinogalactan peptide 22-like isoform X1 [Cucurbita maxima]1.6e-1779.1Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MA  RACFG+YA IIAI +V++LPVSRAEH+SS  PAPAP+SDGT IDQGIAYILMLLAL LTYIIH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

XP_022968217.1 arabinogalactan peptide 22-like isoform X2 [Cucurbita maxima]1.6e-1779.1Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MA  RACFG+YA IIAI +V++LPVSRAEH+SS  PAPAP+SDGT IDQGIAYILMLLAL LTYIIH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

XP_038898060.1 arabinogalactan protein 41-like [Benincasa hispida]3.6e-1778.79Show/hide
Query:  MAVSRACFGIYAG-IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MAV +ACFGIYA  IIA+ +V+ LPVS AE SSSPAPAP+SDGTTIDQGIAY+LML+ALVLTYIIH
Subjt:  MAVSRACFGIYAG-IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

TrEMBL top hitse value%identityAlignment
A0A5D3BTZ5 Arabinogalactan peptide 225.6e-1677.61Show/hide
Query:  MAVSRA-CFGIYAGI-IAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MAV RA CFGIYA + IA+ +V+ LPVS AE SSSPAPAP+SDGTTIDQGIAY+LML+ALVLTYIIH
Subjt:  MAVSRA-CFGIYAGI-IAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

A0A6J1CHE0 arabinogalactan peptide 22-like8.6e-25100Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

A0A6J1G081 arabinogalactan peptide 22-like4.9e-2084.62Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MAV RACFGIYA IIAI +V++LPVSRAEH+SSPAPAP+SDGT IDQGIAYILMLLAL LTYIIH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

A0A6J1HT15 arabinogalactan peptide 22-like isoform X27.8e-1879.1Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MA  RACFG+YA IIAI +V++LPVSRAEH+SS  PAPAP+SDGT IDQGIAYILMLLAL LTYIIH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

A0A6J1HU96 arabinogalactan peptide 22-like isoform X17.8e-1879.1Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        MA  RACFG+YA IIAI +V++LPVSRAEH+SS  PAPAP+SDGT IDQGIAYILMLLAL LTYIIH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSS--PAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 164.9e-0959.62Show/hide
Query:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        + + +F +IL ++ A+ S +PAPAP+SDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

Q8L9T8 Arabinogalactan protein 411.5e-1363.08Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        M+ SR  FG+ + I++I+F I+LP++ A+ S++PAPAP+SDGTTIDQGIAY+LML+ALVLTY+IH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

Q9FK16 Arabinogalactan protein 221.8e-1165.38Show/hide
Query:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        +  I+ VI+LP++++ HSSSPAPAP+SDGT+IDQGIAY+LM++AL LTY IH
Subjt:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

Q9M373 Arabinogalactan protein 204.9e-0959.62Show/hide
Query:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        + A +F +I P + A+ S +PAP+P+SDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.5e-1059.62Show/hide
Query:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        + + +F +IL ++ A+ S +PAPAP+SDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

AT3G61640.1 arabinogalactan protein 203.5e-1059.62Show/hide
Query:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        + A +F +I P + A+ S +PAP+P+SDGT+IDQGIAY+LM++ALVLTY+IH
Subjt:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

AT5G24105.1 arabinogalactan protein 411.0e-1463.08Show/hide
Query:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        M+ SR  FG+ + I++I+F I+LP++ A+ S++PAPAP+SDGTTIDQGIAY+LML+ALVLTY+IH
Subjt:  MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 221.3e-1265.38Show/hide
Query:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH
        +  I+ VI+LP++++ HSSSPAPAP+SDGT+IDQGIAY+LM++AL LTY IH
Subjt:  IIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTTTCCAGGGCTTGTTTTGGCATCTACGCTGGGATTATTGCTATCCTTTTTGTCATTATTTTGCCTGTATCTCGAGCAGAACATTCCTCTTCTCCAGCTCCGGC
TCCCTCTAGCGATGGAACCACAATAGACCAAGGGATTGCATACATTCTAATGCTGCTGGCTTTAGTGCTCACTTATATCATCCAT
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTTTCCAGGGCTTGTTTTGGCATCTACGCTGGGATTATTGCTATCCTTTTTGTCATTATTTTGCCTGTATCTCGAGCAGAACATTCCTCTTCTCCAGCTCCGGC
TCCCTCTAGCGATGGAACCACAATAGACCAAGGGATTGCATACATTCTAATGCTGCTGGCTTTAGTGCTCACTTATATCATCCAT
Protein sequenceShow/hide protein sequence
MAVSRACFGIYAGIIAILFVIILPVSRAEHSSSPAPAPSSDGTTIDQGIAYILMLLALVLTYIIH