CuGenDBv2

Gene ID	MS000509
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein PLASTID TRANSCRIPTIONALLY ACTIVE 7
Genome location	scaffold44:2155963..2156292
RNA-Seq Expression	MS000509
Synteny	MS000509
Gene Ontology terms	GO:0042793 - plastid transcription (biological process) GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR038958 - Protein plastid transcriptionally active 7

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0050522.1 KH domain-containing protein [Cucumis melo var. makuwa]

9.9e-52

95.41

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Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMS YKMDRIPFLEEQVR+VKEQGKL+TMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GPHYLK+EF
Subjt:  GPHYLKEEF

TYK11290.1 KH domain-containing protein [Cucumis melo var. makuwa]

9.9e-52

95.41

Show/hide

Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMS YKMDRIPFLEEQVR+VKEQGKL+TMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GPHYLK+EF
Subjt:  GPHYLKEEF

XP_008455984.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucumis melo]

9.9e-52

95.41

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Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMS YKMDRIPFLEEQVR+VKEQGKL+TMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GPHYLK+EF
Subjt:  GPHYLKEEF

XP_016901917.1 PREDICTED: protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2 [Cucumis melo]

9.9e-52

95.41

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Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMS YKMDRIPFLEEQVR+VKEQGKL+TMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GPHYLK+EF
Subjt:  GPHYLKEEF

XP_022141018.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Momordica charantia]

7.4e-55

100

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Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEFN
        GPHYLKEEFN
Subjt:  GPHYLKEEFN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C3E7 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1

4.8e-52

95.41

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Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMS YKMDRIPFLEEQVR+VKEQGKL+TMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GPHYLK+EF
Subjt:  GPHYLKEEF

A0A1S4E109 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X2

4.8e-52

95.41

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Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMS YKMDRIPFLEEQVR+VKEQGKL+TMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GPHYLK+EF
Subjt:  GPHYLKEEF

A0A5A7U3Y9 KH domain-containing protein

4.8e-52

95.41

Show/hide

Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMS YKMDRIPFLEEQVR+VKEQGKL+TMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GPHYLK+EF
Subjt:  GPHYLKEEF

A0A5D3CIV3 KH domain-containing protein

4.8e-52

95.41

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Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMS YKMDRIPFLEEQVR+VKEQGKL+TMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAE+DPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GPHYLK+EF
Subjt:  GPHYLKEEF

A0A6J1CJC0 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

3.6e-55

100

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Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEFN
        GPHYLKEEFN
Subjt:  GPHYLKEEFN

SwissProt top hits

e value

%identity

Alignment

Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

2.2e-41

74.31

Show/hide

Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDM  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GP YL E +
Subjt:  GPHYLKEEF

Arabidopsis top hits

e value

%identity

Alignment

AT5G24314.1 plastid transcriptionally active7

1.5e-42

74.31

Show/hide

Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDM  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GP YL E +
Subjt:  GPHYLKEEF

AT5G24314.2 plastid transcriptionally active7

1.5e-42

74.31

Show/hide

Query:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP
        KKDDM  YKM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KP
Subjt:  KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKP

Query:  GPHYLKEEF
        GP YL E +
Subjt:  GPHYLKEEF

Sequences

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CDS sequence

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AAGAAGGATGATATGTCGCACTACAAGATGGATCGAATCCCATTCCTTGAAGAACAGGTGAGAAAGGTAAAGGAACAGGGGAAGCTTGTTACAATGGACATCGAAAGACT
ACTATTATCAGAGGATAACCGCTTCGACTTTGTGAATGAGGTTGCAGCTGAGGCTAAGGAATATGTAGAGAGCAACCGTGACGAATATGGGGGTTCCAAGAAAGCTATTC
TTCATGTTCTCAGCAACCGAGTGAATGATGCTGGGTTTTATCGGCCAGATGCGTATGCAGAAGAAGACCCGTTCAAACCCGGACCTCATTATCTGAAAGAAGAATTTAAT

mRNA sequence

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Protein sequence

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KKDDMSHYKMDRIPFLEEQVRKVKEQGKLVTMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKEEFN

MS000509 (gene) of Bitter gourd (TR) v1 genome