CuGenDBv2

Gene ID	MS000531
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit alpha
Genome location	scaffold64:64548..64747
RNA-Seq Expression	MS000531
Synteny	MS000531
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011773 - DNA-directed RNA polymerase, alpha subunit IPR036643 - DNA-directed RNA polymerase, insert domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QVX29614.1 RNA polymerase alpha subunit [Pterodon abruptus]

2.3e-19

86.36

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEI  T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

QWY87303.1 RNA polymerase alpha subunit [Pterocarpus angolensis]

1.3e-19

86.36

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEI  T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

QWY87386.1 RNA polymerase alpha subunit [Pterocarpus erinaceus]

2.3e-19

86.36

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEI  T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

YP_009767210.1 RNA polymerase alpha subunit [Dussia macroprophyllata]

2.7e-20

87.88

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEIG T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

YP_009771280.1 RNA polymerase alpha subunit [Smithia erubescens]

1.7e-19

86.36

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEIG T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTR ASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

TrEMBL top hits

e value

%identity

Alignment

A0A1W6F847 DNA-directed RNA polymerase subunit alpha

1.1e-19

86.36

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEI  T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

A0A3S8V6L9 DNA-directed RNA polymerase subunit alpha

1.1e-19

86.36

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEI  T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

A0A6H0E8S6 DNA-directed RNA polymerase subunit alpha

1.3e-20

87.88

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEIG T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

A0A6H0EI04 DNA-directed RNA polymerase subunit alpha

8.4e-20

86.36

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEIG T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTR ASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

A0A6M3TW27 DNA-directed RNA polymerase subunit alpha

1.1e-19

86.36

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEI  T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

SwissProt top hits

e value

%identity

Alignment

A1XGS0 DNA-directed RNA polymerase subunit alpha

1.9e-21

83.33

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+ LLGEI  T ITR KSEKIPHEYSTIV I+ESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

Q09WY5 DNA-directed RNA polymerase subunit alpha

8.6e-22

84.85

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+ LLGEI  T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

Q2PMQ3 DNA-directed RNA polymerase subunit alpha

1.1e-21

83.33

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+VLLGEI  T ITRVKSEKIPHEYSTI+ I+ESVHEILMNLKEI LRS LYGTRDASIC KG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

Q33C00 DNA-directed RNA polymerase subunit alpha

4.3e-21

81.82

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+ LLGEI  T ITRVKSEK+PHEYSTI+ IQESVHEILMNLKEI LRS LYGT DASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

Q4VZK3 DNA-directed RNA polymerase subunit alpha

3.9e-22

86.36

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MRK LLGEI  T ITR KSEKIPHEYSTIV IQESVHEILMNLKEI LRS LYGTRDASICVKG G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

Arabidopsis top hits

e value

%identity

Alignment

ATCG00740.1 RNA polymerase subunit alpha

1.2e-18

72.73

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Query:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG
        MR+ LLGEI  T ITR KSE IPH+YS I  IQESVHEILMNL EI LRS LYGTR+A ICV+G G
Subjt:  MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEI-LRSILYGTRDASICVKGLG

Sequences

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CDS sequence

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ATGCGAAAAGTTTTGCTTGGAGAAATAGGGAGAACATATATCACACGTGTAAAATCTGAAAAAATACCACATGAATACTCTACCATAGTCAGTATTCAAGAATCAGTACA
TGAAATTTTAATGAATCTGAAAGAAATCTTGAGAAGTATTCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCTTGGA

mRNA sequence

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ATGCGAAAAGTTTTGCTTGGAGAAATAGGGAGAACATATATCACACGTGTAAAATCTGAAAAAATACCACATGAATACTCTACCATAGTCAGTATTCAAGAATCAGTACA
TGAAATTTTAATGAATCTGAAAGAAATCTTGAGAAGTATTCTGTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCTTGGA

Protein sequence

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MRKVLLGEIGRTYITRVKSEKIPHEYSTIVSIQESVHEILMNLKEILRSILYGTRDASICVKGLG

MS000531 (gene) of Bitter gourd (TR) v1 genome