CuGenDBv2

Gene ID	MS000537
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	succinate dehydrogenase subunit 6, mitochondrial
Genome location	scaffold64:209476..211648
RNA-Seq Expression	MS000537
Synteny	MS000537
Gene Ontology terms	GO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043495 - protein membrane anchor (molecular function)
InterPro domains	IPR034574 - Succinate dehydrogenase subunit 6, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008450314.1 PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis melo]

2.5e-74

93.1

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+PYVQR  PLPSWSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG
        SFLAGG FGWTFG E+ANHWYQLYRLDTMAAQVKFMEWWRNK+EG
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG

XP_011660175.1 succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus]

8.5e-75

93.1

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWS+RFSILDNY+PYVQR+ PLPSWSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG
        SFLAGGVFGWTFG E+ANHWYQLYR+DTMAAQVKFMEWWRNK+EG
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG

XP_022153276.1 succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]

6.1e-81

100

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF
        SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

3.5e-76

92.52

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLPSWS SDVE FIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF
        SFLAGG FGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNK+EGRF
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF

XP_022965868.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]

3.2e-74

92.36

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLPSWS SDVE FIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNE
        SFLAGG FGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNK+E
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BP04 succinate dehydrogenase subunit 6, mitochondrial

1.2e-74

93.1

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+PYVQR  PLPSWSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG
        SFLAGG FGWTFG E+ANHWYQLYRLDTMAAQVKFMEWWRNK+EG
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG

A0A5D3DY28 Succinate dehydrogenase subunit 6

1.2e-74

93.1

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+PYVQR  PLPSWSSSDVE FIASDPVHGP LKTAREAVNFGLTGSVIGAVSTAGVAWKYS+SLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG
        SFLAGG FGWTFG E+ANHWYQLYRLDTMAAQVKFMEWWRNK+EG
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG

A0A6J1DK58 succinate dehydrogenase subunit 6, mitochondrial

3.0e-81

100

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF
        SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like

1.7e-76

92.52

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLPSWS SDVE FIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF
        SFLAGG FGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNK+EGRF
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF

A0A6J1HQ77 succinate dehydrogenase subunit 6, mitochondrial-like

1.6e-74

92.36

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Query:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL
        MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLPSWS SDVE FIASDPVHGP LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGL

Query:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNE
        SFLAGG FGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNK+E
Subjt:  SFLAGGVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNE

SwissProt top hits

e value

%identity

Alignment

Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial

1.8e-30

45.52

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Query:  KHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWT
        +H EG K  W++ FS LD +     R+KPLP W+ +DV+ FIASDPV+GP LK  RE+  F L G+++G     G+A KYS++ HG  L+   G + G  
Subjt:  KHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWT

Query:  FGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG
         G EVA HWYQLY+ D   A ++F+ WW +K  G
Subjt:  FGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEG

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial

3.2e-56

72.66

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY  + +R+ PLPSWSSSDVE FIASDPVHGPTLKTAREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAG

Query:  GVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNE
        GVFGWTFG EVANH  QLY+LDTMAAQVKFMEWW  K++
Subjt:  GVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNE

Arabidopsis top hits

e value

%identity

Alignment

AT1G08480.1 unknown protein

2.3e-57

72.66

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAG
        S+SF  K+W G K+FWS+R S  +NY  + +R+ PLPSWSSSDVE FIASDPVHGPTLKTAREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAG

Query:  GVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNE
        GVFGWTFG EVANH  QLY+LDTMAAQVKFMEWW  K++
Subjt:  GVFGWTFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNE

Sequences

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CDS sequence

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ATGGAAGATTCGTCGTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAATTTTGGTCCGAGAGATTCTCGATCCTCGACAACTATGCCCCCTACGTCCAGCG
CGAGAAGCCCCTTCCTTCATGGTCTTCCTCCGATGTCGAGGCCTTTATTGCTTCCGACCCCGTCCATGGCCCCACTTTGAAGACTGCTAGAGAAGCTGTAAACTTTGGTC
TTACAGGAAGTGTTATTGGAGCTGTTTCAACTGCAGGTGTTGCATGGAAATATTCAAGAAGTTTGCACGGCGCTGGGCTGTCGTTCCTAGCAGGAGGTGTATTCGGTTGG
ACTTTCGGCCATGAAGTTGCAAATCACTGGTATCAACTCTACAGGCTCGACACCATGGCTGCACAAGTCAAGTTTATGGAGTGGTGGAGAAACAAGAATGAGGGACGTTT
T

mRNA sequence

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Protein sequence

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MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHGPTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGW
TFGHEVANHWYQLYRLDTMAAQVKFMEWWRNKNEGRF

MS000537 (gene) of Bitter gourd (TR) v1 genome