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MS000556 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000556
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold64:528337..528576
RNA-Seq ExpressionMS000556
SyntenyMS000556
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8647151.1 hypothetical protein MANES_09G048156v8, partial [Manihot esculenta]5.6e-1240.51Show/hide
Query:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL
        MI +SWNC+ A+SP F+    +  + + PD+  I+EP+VSG  AD +CG     ++ R+E+  F GGIW+ W  N  S+
Subjt:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL

PKI45766.1 hypothetical protein CRG98_033773 [Punica granatum]5.1e-1344Show/hide
Query:  SWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL
        SWNCR A S  F   LR  ++ ++PD++ I+EP++S   AD+VC  F  F   R+EA  F GG+WV W+ +C+ L
Subjt:  SWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL

XP_019157960.1 PREDICTED: uncharacterized protein LOC109154682 [Ipomoea nil]3.9e-1347.95Show/hide
Query:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQ
        MIF+ WNC+ A+S  FK  LR   + +NP ++ +LEPKVSG  A+++C SF    + R+EA  F GGIW+LW+
Subjt:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQ

XP_019178132.1 PREDICTED: uncharacterized protein LOC109173349 [Ipomoea nil]1.9e-1246.58Show/hide
Query:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQ
        M  M WNC+ A+S  F+  L+  I+ YNP ++ +LEPKVSG  A+R+C S     + R+EA  F GGIWV W+
Subjt:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQ

XP_031402735.1 uncharacterized protein LOC116212324 [Punica granatum]2.2e-1650.63Show/hide
Query:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL
        M  + WNCR A S RF  V+++MI+ + P+++VI+EP++SG  AD VC  FS +S  R+EA  F GGIWV WQPN V +
Subjt:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL

TrEMBL top hitse value%identityAlignment
A0A1R3K8Z7 Endonuclease/exonuclease/phosphatase6.7e-1142.47Show/hide
Query:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQ
        M  + WNCR A++P F+  +R++I++++ D+L+I+EPKVS    DR+  S     +T+++A  F GGIWVLW+
Subjt:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQ

A0A2I0HUV7 Reverse transcriptase domain-containing protein (Fragment)1.1e-1050Show/hide
Query:  LRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL
        +++MI+ + P+++VI+EP++SG  AD VC  FS +S  R+EA  F GGIWV WQPN V +
Subjt:  LRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL

A0A2I0IQR2 Uncharacterized protein2.5e-1344Show/hide
Query:  SWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL
        SWNCR A S  F   LR  ++ ++PD++ I+EP++S   AD+VC  F  F   R+EA  F GG+WV W+ +C+ L
Subjt:  SWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL

A0A6P8E5K3 uncharacterized protein LOC1162123241.1e-1650.63Show/hide
Query:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL
        M  + WNCR A S RF  V+++MI+ + P+++VI+EP++SG  AD VC  FS +S  R+EA  F GGIWV WQPN V +
Subjt:  MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL

A0A7C8YH92 Uncharacterized protein (Fragment)5.1e-1141.56Show/hide
Query:  FMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL
        F+ WN + A+   F  VL+++I+ Y+P VL ++E KVSG +AD +C         R+EA  F GGIWVLW+ + ++L
Subjt:  FMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTTATGTCTTGGAATTGTAGGGAGGCTAGCAGCCCCCGTTTTAAATCTGTTCTTAGGGATATGATCCAAGCTTATAATCCGGATGTACTAGTAATCTTAGAACC
CAAAGTTAGTGGTATTGTGGCCGATAGAGTTTGTGGTAGTTTTTCTAGATTTTCTTATACTCGCATTGAAGCTTCAAGATTTAAGGGTGGCATTTGGGTGTTGTGGCAAC
CTAATTGTGTTTCACTTGTT
mRNA sequenceShow/hide mRNA sequence
ATGATTTTTATGTCTTGGAATTGTAGGGAGGCTAGCAGCCCCCGTTTTAAATCTGTTCTTAGGGATATGATCCAAGCTTATAATCCGGATGTACTAGTAATCTTAGAACC
CAAAGTTAGTGGTATTGTGGCCGATAGAGTTTGTGGTAGTTTTTCTAGATTTTCTTATACTCGCATTGAAGCTTCAAGATTTAAGGGTGGCATTTGGGTGTTGTGGCAAC
CTAATTGTGTTTCACTTGTT
Protein sequenceShow/hide protein sequence
MIFMSWNCREASSPRFKSVLRDMIQAYNPDVLVILEPKVSGIVADRVCGSFSRFSYTRIEASRFKGGIWVLWQPNCVSLV