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MS000570 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000570
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold64:860541..860760
RNA-Seq ExpressionMS000570
SyntenyMS000570
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063934.1 uncharacterized protein E6C27_scaffold616G00740 [Cucumis melo var. makuwa]1.8e-0946.77Show/hide
Query:  DVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG
        DVW  +     S H +G W +EL W+C    GK  RR +WR+ W A IY IWN+WN ++HGG
Subjt:  DVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG

TYK11300.1 uncharacterized protein E5676_scaffold1827G00050 [Cucumis melo var. makuwa]1.8e-0946.77Show/hide
Query:  DVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG
        DVW  +     S H +G W +EL W+C    GK  RR +WR+ W A IY IWN+WN ++HGG
Subjt:  DVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG

XP_022158199.1 uncharacterized protein LOC111024737 [Momordica charantia]8.9e-0947.69Show/hide
Query:  FSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAG-KSRRHVWRLAWSAIIYHIWNEWNAQIHGG
        F    W  +     S H V  WS EL W+C +SAG  SRRHVWRLAW++ +  +W E N +IHGG
Subjt:  FSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAG-KSRRHVWRLAWSAIIYHIWNEWNAQIHGG

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]3.9e-1249.25Show/hide
Query:  CPFSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAG-KSRRHVWRLAWSAIIYHIWNEWNAQIHGG
        CP+S  VW  M  W+ S H V  WS EL W+C ++ G  SRRHVWRLAW+  +  +W E N +IH G
Subjt:  CPFSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAG-KSRRHVWRLAWSAIIYHIWNEWNAQIHGG

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]6.2e-1043.28Show/hide
Query:  CPFSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG
        CPF  ++W  +  + +S H +G W +EL W+C    GK  RR +W L W A IY IW E N  +HGG
Subjt:  CPFSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG

TrEMBL top hitse value%identityAlignment
A0A5A7TWG5 Reverse transcriptase domain-containing protein5.6e-0952.94Show/hide
Query:  SLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG
        S H +G W +EL W+C    GK  RR +WR+ W A IY IWNEWN ++HGG
Subjt:  SLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG

A0A5A7V9M6 Uncharacterized protein8.7e-1046.77Show/hide
Query:  DVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG
        DVW  +     S H +G W +EL W+C    GK  RR +WR+ W A IY IWN+WN ++HGG
Subjt:  DVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG

A0A5D3CIW1 Uncharacterized protein8.7e-1046.77Show/hide
Query:  DVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG
        DVW  +     S H +G W +EL W+C    GK  RR +WR+ W A IY IWN+WN ++HGG
Subjt:  DVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKS-RRHVWRLAWSAIIYHIWNEWNAQIHGG

A0A6J1DYP6 uncharacterized protein LOC1110247374.3e-0947.69Show/hide
Query:  FSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAG-KSRRHVWRLAWSAIIYHIWNEWNAQIHGG
        F    W  +     S H V  WS EL W+C +SAG  SRRHVWRLAW++ +  +W E N +IHGG
Subjt:  FSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAG-KSRRHVWRLAWSAIIYHIWNEWNAQIHGG

A0A6J1E271 uncharacterized protein LOC1110253241.9e-1249.25Show/hide
Query:  CPFSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAG-KSRRHVWRLAWSAIIYHIWNEWNAQIHGG
        CP+S  VW  M  W+ S H V  WS EL W+C ++ G  SRRHVWRLAW+  +  +W E N +IH G
Subjt:  CPFSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAG-KSRRHVWRLAWSAIIYHIWNEWNAQIHGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCCCTTTTAGTATGGATGTTTGGGGTGCTATGACTGGTTGGTCGACCTCTTTGCATACTGTTGGAGGTTGGTCCTTGGAGCTTGATTGGGTTTGTCGCATTAGTGCAGG
CAAATCGCGTCGCCATGTGTGGCGGCTGGCTTGGTCAGCGATTATTTATCATATTTGGAATGAGTGGAATGCTCAGATCCATGGAGGCCTGTTAAACCGTCTTACA
mRNA sequenceShow/hide mRNA sequence
TGCCCTTTTAGTATGGATGTTTGGGGTGCTATGACTGGTTGGTCGACCTCTTTGCATACTGTTGGAGGTTGGTCCTTGGAGCTTGATTGGGTTTGTCGCATTAGTGCAGG
CAAATCGCGTCGCCATGTGTGGCGGCTGGCTTGGTCAGCGATTATTTATCATATTTGGAATGAGTGGAATGCTCAGATCCATGGAGGCCTGTTAAACCGTCTTACA
Protein sequenceShow/hide protein sequence
CPFSMDVWGAMTGWSTSLHTVGGWSLELDWVCRISAGKSRRHVWRLAWSAIIYHIWNEWNAQIHGGLLNRLT