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MS000571 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000571
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold64:860764..860895
RNA-Seq ExpressionMS000571
SyntenyMS000571
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]1.2e-0868.18Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        SF AWL I++RL TRDRLH W  SIP  C+LC  G ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]6.0e-0863.64Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        SF AWL I++RL TRDR H W  S+P  C+LC  G ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]3.8e-1068.18Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        SF AWL I++RL TRDRLH W  S+P WC+LC  G ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]6.0e-0863.64Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        SF AWL I++RL TRDR H W  S+P  C+LC  G ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]6.0e-0863.64Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        SF AWL I++RL TRDR H W  S+P  C+LC  G ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

TrEMBL top hitse value%identityAlignment
A0A178UW88 Reverse transcriptase domain-containing protein2.9e-0865.91Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        +FIAW+   NRL+TRDRL  W  S+P  CVLC VG ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

A0A5A7TZS0 Reverse transcriptase domain-containing protein5.9e-0968.18Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        SF AWL I++RL TRDRLH W  SIP  C+LC  G ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

A0A5A7UP65 Reverse transcriptase2.9e-0863.64Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        SF AWL I++RL TRDR H W  S+P  C+LC  G ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein1.8e-1068.18Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        SF AWL I++RL TRDRLH W  S+P WC+LC  G ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

A0A5D3D7P6 Reverse transcriptase2.9e-0863.64Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        SF AWL I++RL TRDR H W  S+P  C+LC  G ESRDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.8e-0956.82Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        +FI W++  NRL+TRDRL  W  SIP  C+LC    ESR HLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.2e-0745.45Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        +FIAW+ +R+RL+T+DR+  W    P  C+ C    E+R HLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.2e-0750Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        S +AW+ I+NRL T DR+  W     + CVLC    E+RDHLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.9e-0954.55Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        +FI W++  NRL+TRDRL  W  SIP  C+LC    +SR HLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.4e-0850Show/hide
Query:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF
        +FI+W+ IR+RL TRD+L  W   +P+ C+LC    E+R HLFF
Subjt:  SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTTTTATTGCTTGGTTGATGATTCGTAATCGGCTCTATACGAGGGACCGGCTGCATTGGTGGGTCCCCTCTATACCTACTTGGTGTGTTTTGTGTGCGGTGGGGGCAGA
GTCTCGTGATCACTTGTTTTTT
mRNA sequenceShow/hide mRNA sequence
TCTTTTATTGCTTGGTTGATGATTCGTAATCGGCTCTATACGAGGGACCGGCTGCATTGGTGGGTCCCCTCTATACCTACTTGGTGTGTTTTGTGTGCGGTGGGGGCAGA
GTCTCGTGATCACTTGTTTTTT
Protein sequenceShow/hide protein sequence
SFIAWLMIRNRLYTRDRLHWWVPSIPTWCVLCAVGAESRDHLFF