CuGenDBv2

Gene ID	MS000574
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	actin-interacting protein 1-2
Genome location	scaffold64:930970..931171
RNA-Seq Expression	MS000574
Synteny	MS000574
Gene Ontology terms	GO:0030836 - positive regulation of actin filament depolymerization (biological process) GO:0030864 - cortical actin cytoskeleton (cellular component) GO:0051015 - actin filament binding (molecular function)
InterPro domains	IPR036322 - WD40-repeat-containing domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK28480.1 actin-interacting protein 1-2 [Cucumis melo var. makuwa]

3.8e-14

71.01

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS + +SGHMKNVTSLVV KS  KVILSTSY+ +IIKWIQ +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

XP_004137336.2 actin-interacting protein 1-2 [Cucumis sativus]

2.2e-14

71.01

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS + +SGHMKNVTSLVV KS  KVILSTSY+ +IIKWIQ +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

XP_008453467.1 PREDICTED: actin-interacting protein 1-2 [Cucumis melo]

3.8e-14

71.01

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS + +SGHMKNVTSLVV KS  KVILSTSY+ +IIKWIQ +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

XP_022134970.1 actin-interacting protein 1-2 [Momordica charantia]

3.2e-13

68.12

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS + +SGH+KNVTSLVV K+  KVILSTSY+ LIIKW Q +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

XP_038879471.1 actin-interacting protein 1-2 [Benincasa hispida]

2.9e-14

72.46

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS   +SGHMKNVTSLVV KS  KVILSTSY+ LIIKWIQ +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LST9 WD_REPEATS_REGION domain-containing protein

1.1e-14

71.01

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS + +SGHMKNVTSLVV KS  KVILSTSY+ +IIKWIQ +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

A0A1S3BWE0 actin-interacting protein 1-2

1.9e-14

71.01

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS + +SGHMKNVTSLVV KS  KVILSTSY+ +IIKWIQ +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

A0A5A7UVD1 Actin-interacting protein 1-2

1.9e-14

71.01

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS + +SGHMKNVTSLVV KS  KVILSTSY+ +IIKWIQ +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

A0A5D3DZ17 Actin-interacting protein 1-2

1.9e-14

71.01

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS + +SGHMKNVTSLVV KS  KVILSTSY+ +IIKWIQ +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

A0A6J1BZU0 actin-interacting protein 1-2

1.6e-13

68.12

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Query:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT SLFS SDLDKS + +SGH+KNVTSLVV K+  KVILSTSY+ LIIKW Q +GYSGKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKS-LYISGHMKNVTSLVVFKS-AKVILSTSYNRLIIKWIQVVGYSGKLQR

SwissProt top hits

e value

%identity

Alignment

Q9LV35 Actin-interacting protein 1-2

7.0e-11

56.52

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Query:  VIVYDLDGTFSLFSTSDLDKSLY-ISGHMKNVTSLVVFK-SAKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT S+FS SDLDKS +  SGHMKNV+SL V K +A  ILS SY+ LI KW+   G+ GKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKSLY-ISGHMKNVTSLVVFK-SAKVILSTSYNRLIIKWIQVVGYSGKLQR

Q9ZU34 Actin-interacting protein 1-1

2.4e-11

57.35

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Query:  VIVYDLDGTFSLFSTSDLDK-SLYISGHMKNVTSLVVF-KSAKVILSTSYNRLIIKWIQVVGYSGKLQ
        +I   L GT SLFS  D+DK  L +SGH+KNVTSL V  ++ K ILS SY+ LI+KW++ VGYS KLQ
Subjt:  VIVYDLDGTFSLFSTSDLDK-SLYISGHMKNVTSLVVF-KSAKVILSTSYNRLIIKWIQVVGYSGKLQ

Arabidopsis top hits

e value

%identity

Alignment

AT2G01330.1 nucleotide binding

1.7e-12

57.35

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Query:  VIVYDLDGTFSLFSTSDLDK-SLYISGHMKNVTSLVVF-KSAKVILSTSYNRLIIKWIQVVGYSGKLQ
        +I   L GT SLFS  D+DK  L +SGH+KNVTSL V  ++ K ILS SY+ LI+KW++ VGYS KLQ
Subjt:  VIVYDLDGTFSLFSTSDLDK-SLYISGHMKNVTSLVVF-KSAKVILSTSYNRLIIKWIQVVGYSGKLQ

AT2G01330.2 nucleotide binding

1.7e-12

57.35

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Query:  VIVYDLDGTFSLFSTSDLDK-SLYISGHMKNVTSLVVF-KSAKVILSTSYNRLIIKWIQVVGYSGKLQ
        +I   L GT SLFS  D+DK  L +SGH+KNVTSL V  ++ K ILS SY+ LI+KW++ VGYS KLQ
Subjt:  VIVYDLDGTFSLFSTSDLDK-SLYISGHMKNVTSLVVF-KSAKVILSTSYNRLIIKWIQVVGYSGKLQ

AT3G18060.1 transducin family protein / WD-40 repeat family protein

5.0e-12

56.52

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Query:  VIVYDLDGTFSLFSTSDLDKSLY-ISGHMKNVTSLVVFK-SAKVILSTSYNRLIIKWIQVVGYSGKLQR
        ++   L GT S+FS SDLDKS +  SGHMKNV+SL V K +A  ILS SY+ LI KW+   G+ GKLQR
Subjt:  VIVYDLDGTFSLFSTSDLDKSLY-ISGHMKNVTSLVVFK-SAKVILSTSYNRLIIKWIQVVGYSGKLQR

Sequences

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CDS sequence

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GTCATAGTTTATGATCTTGATGGAACTTTTAGCCTTTTTTCAACTAGTGACCTTGACAAATCCCTTTATATATCCGGACATATGAAGAATGTTACTTCATTAGTCGTTTT
TAAATCTGCTAAAGTTATATTATCTACTAGCTACAATAGGTTGATTATTAAATGGATTCAAGTTGTTGGGTACAGTGGCAAGTTGCAAAGA

mRNA sequence

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Protein sequence

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VIVYDLDGTFSLFSTSDLDKSLYISGHMKNVTSLVVFKSAKVILSTSYNRLIIKWIQVVGYSGKLQR

MS000574 (gene) of Bitter gourd (TR) v1 genome