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MS000577 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000577
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold64:1048830..1049138
RNA-Seq ExpressionMS000577
SyntenyMS000577
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]8.0e-1139.47Show/hide
Query:  RTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF
        R KEET  HI W C+V +DIW        + + +DR+NW+ ++YW WL++ + E +    + I  QIWE RN+ +F
Subjt:  RTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF

XP_035540219.1 uncharacterized protein LOC118344207 [Juglans regia]5.7e-0935.92Show/hide
Query:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR
        K  NN+ +T+ NLL K IV D WC  C  +EET  H+ W C  T D+W++  K+ +  W V   +  +      LV+  T+  M   + IM  +W  RN 
Subjt:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR

Query:  VVF
         VF
Subjt:  VVF

XP_041020404.1 uncharacterized protein LOC121262033 [Juglans microcarpa x Juglans regia]2.2e-0830.1Show/hide
Query:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR
        K+ N + + K NL  K I+ +P+   C+ +EET  H+ W C +  D+W++ F S +  W  +++   +   W  L+E  ++ +M  I T+M  +W  RN 
Subjt:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR

Query:  VVF
         +F
Subjt:  VVF

XP_042942906.1 uncharacterized protein LOC122277092 [Carya illinoinensis]2.3e-1036.89Show/hide
Query:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR
        K  NN   TK NL  + +  DP C  C  KEET CH+ WNC    D+WA+   S +  W    ++  +   W+ +VE   E ++  I T+M  IW  RN 
Subjt:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR

Query:  VVF
        +VF
Subjt:  VVF

XP_042984282.1 uncharacterized protein LOC122313374 [Carya illinoinensis]1.8e-1036.89Show/hide
Query:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR
        K  NN   TK NL  + +  DP C  C  KEET CH+ WNC    D+WA+   S +  W    ++  +   W+ +VE   E ++  I T+M  IW  RN 
Subjt:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR

Query:  VVF
        +VF
Subjt:  VVF

TrEMBL top hitse value%identityAlignment
A0A5B6W6M0 Ribonuclease H-like superfamily protein4.4e-0728Show/hide
Query:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR
        K  NN   T+TNL  + +V+   C  C   EET  H+F +C +  DIWA+        W +D++ +  +D+   + E+ +   +  ++  +W +W  RN+
Subjt:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.9e-1139.47Show/hide
Query:  RTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF
        R KEET  HI W C+V +DIW        + + +DR+NW+ ++YW WL++ + E +    + I  QIWE RN+ +F
Subjt:  RTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF

A0A6P9DY88 uncharacterized protein LOC1183442072.8e-0935.92Show/hide
Query:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR
        K  NN+ +T+ NLL K IV D WC  C  +EET  H+ W C  T D+W++  K+ +  W V   +  +      LV+  T+  M   + IM  +W  RN 
Subjt:  KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNR

Query:  VVF
         VF
Subjt:  VVF

A0A7C8ZSU5 Uncharacterized protein5.8e-0734Show/hide
Query:  NITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKY-FKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF
        +I  T+ NL  KG+  D +C FC    ET  HIF +C V +DIWAK  F+ N++     R   +  D+  +L +   +       T +W IW  RN+ +F
Subjt:  NITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKY-FKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF

A2I5F4 RNA-directed DNA polymerase (Fragment)1.8e-0834.31Show/hide
Query:  STKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSN-----WSVQDYWSWLVEHSTEGD-MTNILTIMWQIWECRNRV
        +T+ NL  K I+++  C FC  +EE++ H+F +C+ T+ IWA    S+L L  VD+ N     WS    W +++    + D +   + I+W IW CRN  
Subjt:  STKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSN-----WSVQDYWSWLVEHSTEGD-MTNILTIMWQIWECRNRV

Query:  VF
        +F
Subjt:  VF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein9.7e-0728.12Show/hide
Query:  TKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTI-----MWQIWECRN
        TK  ++  G +  P C+FC T +ET  H+F++C+   ++W  YF S + ++         +D   WL     + ++T IL +     ++ IW+ RN
Subjt:  TKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTI-----MWQIWECRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGATTTTCAACAACATCACCTCCACTAAAACAAATCTTTTGATTAAAGGAATAGTAACTGACCCTTGGTGTGTTTTTTGCAGGACGAAAGAGGAGACAAACTGCCATAT
ATTTTGGAATTGTCAGGTAACAGAAGACATCTGGGCTAAATACTTTAAGTCTAACTTAGATTTATGGTGTGTTGACAGGAGCAACTGGAGCGTACAAGACTACTGGAGTT
GGCTGGTAGAGCACTCTACAGAAGGAGATATGACAAATATTTTGACAATCATGTGGCAAATTTGGGAATGCAGGAATAGGGTGGTGTTC
mRNA sequenceShow/hide mRNA sequence
AAGATTTTCAACAACATCACCTCCACTAAAACAAATCTTTTGATTAAAGGAATAGTAACTGACCCTTGGTGTGTTTTTTGCAGGACGAAAGAGGAGACAAACTGCCATAT
ATTTTGGAATTGTCAGGTAACAGAAGACATCTGGGCTAAATACTTTAAGTCTAACTTAGATTTATGGTGTGTTGACAGGAGCAACTGGAGCGTACAAGACTACTGGAGTT
GGCTGGTAGAGCACTCTACAGAAGGAGATATGACAAATATTTTGACAATCATGTGGCAAATTTGGGAATGCAGGAATAGGGTGGTGTTC
Protein sequenceShow/hide protein sequence
KIFNNITSTKTNLLIKGIVTDPWCVFCRTKEETNCHIFWNCQVTEDIWAKYFKSNLDLWCVDRSNWSVQDYWSWLVEHSTEGDMTNILTIMWQIWECRNRVVF