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MS000595 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000595
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold93:89988..90434
RNA-Seq ExpressionMS000595
SyntenyMS000595
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016684339.1 uncharacterized protein LOC107902718 [Gossypium hirsutum]3.2e-1331.08Show/hide
Query:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS
        LK+N D    +A +    G+++R+  G I  +G Q H    +  I E +A+  GL FA+ +G SN+ +ESDS +  + I    +     +    D  + +
Subjt:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS

Query:  RKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWLLRVAD
        RKF+ C F  ++RE NRA  ++A  G+     + W +  P   L VAD
Subjt:  RKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWLLRVAD

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.0e-1640Show/hide
Query:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS
        LKLNTDAAC  A  ST  G ++RDS  S+ A      P P + L+ E+  I EGL FA +   ++L VESDS ++  LI  ++ T G E+  + +I + +
Subjt:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS

Query:  RKFEVCYFMHVSREANRAADLLAKHGL-HVCSSIEWKQSFPPWLLRVADR
          F    F H SR+ NRAA  LAK G+    ++  W  +FP WLL +  R
Subjt:  RKFEVCYFMHVSREANRAADLLAKHGL-HVCSSIEWKQSFPPWLLRVADR

XP_023905101.1 uncharacterized protein LOC112016863 [Quercus suber]2.1e-1232.14Show/hide
Query:  KLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTSR
        K+N DAA    +  +G+G ++RDS G+  A+  Q  P    +  +E +A    L FA  IG ++  +E DS I +  +   + +L P  +++ DI  +S 
Subjt:  KLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTSR

Query:  KFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPP
         F    + H  RE N+ A  LA+H +HV   + W +S PP
Subjt:  KFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPP

XP_030922930.1 uncharacterized protein LOC115949794 [Quercus lobata]2.1e-1235.17Show/hide
Query:  KLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVL---HDIHS
        K+N D A   A    G+G ++RD LG + A  C+   +P  ++  E  AI+ GLLFA  IG  ++ VESD  I    + G   T  P  +VL     I  
Subjt:  KLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVL---HDIHS

Query:  TSRKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWL
         S  F    F HV ++ NR+  +LAKH L +   I W +  P +L
Subjt:  TSRKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWL

XP_030964668.1 uncharacterized protein LOC115985919 [Quercus lobata]8.5e-1433.8Show/hide
Query:  KLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTSR
        K+N D    +AN+  G+G ++RD LG + AT C+   +P  ++  +  A++ GLLF   IG  ++ VESDS I+   +NG          ++  I   S+
Subjt:  KLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTSR

Query:  KFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWL
         F      HV R+  R A LLAKH L +   I W +  P +L
Subjt:  KFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWL

TrEMBL top hitse value%identityAlignment
A0A1U8J822 uncharacterized protein LOC1079027181.6e-1331.08Show/hide
Query:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS
        LK+N D    +A +    G+++R+  G I  +G Q H    +  I E +A+  GL FA+ +G SN+ +ESDS +  + I    +     +    D  + +
Subjt:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS

Query:  RKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWLLRVAD
        RKF+ C F  ++RE NRA  ++A  G+     + W +  P   L VAD
Subjt:  RKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWLLRVAD

A0A6J1DX30 uncharacterized protein LOC1110248743.4e-1640Show/hide
Query:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS
        LKLNTDAAC  A  ST  G ++RDS  S+ A      P P + L+ E+  I EGL FA +   ++L VESDS ++  LI  ++ T G E+  + +I + +
Subjt:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS

Query:  RKFEVCYFMHVSREANRAADLLAKHGL-HVCSSIEWKQSFPPWLLRVADR
          F    F H SR+ NRAA  LAK G+    ++  W  +FP WLL +  R
Subjt:  RKFEVCYFMHVSREANRAADLLAKHGL-HVCSSIEWKQSFPPWLLRVADR

A0A6P5RZ31 uncharacterized protein LOC1107515795.0e-1237.33Show/hide
Query:  LKLNTDAACGVANQSTGLGYLLR----DSLGSISA--TGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCIS-NSLINGDLDTLGPEKVVL
        LKLN D AC  +    GLG ++R    D +G+IS   TGC       ++ + EL+AI+EGL F    G  +L VE+D+  + N +I+G  +  G    ++
Subjt:  LKLNTDAACGVANQSTGLGYLLR----DSLGSISA--TGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCIS-NSLINGDLDTLGPEKVVL

Query:  HDIHSTSRKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWL
        +DIH  SR F+   F+   R  N  AD LAK  L   S   W +  PPWL
Subjt:  HDIHSTSRKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWL

A0A7J9D462 Uncharacterized protein5.0e-1231.29Show/hide
Query:  KLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTSR
        K+N DA   +AN      +++R+  G I  +G Q H    + +I E +A+  GL FA+ +G S + +ESDS +  + I    +     +    D+ + +R
Subjt:  KLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTSR

Query:  KFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWLLRVAD
        KF  C F  V+RE N AA  L   G+       W +  P  +L VAD
Subjt:  KFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWLLRVAD

J7G0Q7 Non-ltr retroelement reverse transcriptase2.3e-1233.33Show/hide
Query:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS
        LK+N D A    ++  G G ++RD  GS+   G +    P +SL+ EL+AIK GL   +     N+ VESD   +  L+N     L PE  ++ DI +T 
Subjt:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS

Query:  RKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWLL
            +    HV RE N AA  +AK          W +  P WL+
Subjt:  RKFEVCYFMHVSREANRAADLLAKHGLHVCSSIEWKQSFPPWLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein5.0e-0432.04Show/hide
Query:  ATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTSRKFEVCYFMHVSREANRAADLLAKHGLHVC
        + GC+  PSP   L  E  AIK  +L A+ +  S+L V SDS      +N ++ +L     +L +I S   +F    F  + R  N  AD  AK  L + 
Subjt:  ATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTSRKFEVCYFMHVSREANRAADLLAKHGLHVC

Query:  SSI
         +I
Subjt:  SSI

AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0630.65Show/hide
Query:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS
        +K N D +    +  +  G+++RDS GS    G        N+L  E+ A+   +    S G   +  E D+ +   LING     G    +  DIH   
Subjt:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS

Query:  RKFEVCYFMHVSREANRAADLLAK
        RKFE  +F  + R  N  AD+LAK
Subjt:  RKFEVCYFMHVSREANRAADLLAK

AT4G29090.1 Ribonuclease H-like superfamily protein1.8e-0626.77Show/hide
Query:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS
        +K NTDA     N+  G+G++LR+  G +   G +  P   + L  EL A++  +L       + +  ESDS +   ++N D +     K  + D+    
Subjt:  LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTS

Query:  RKFEVCYFMHVSREANRAADLLAKHGL
         +F    F+ + RE N  A+ +A+  L
Subjt:  RKFEVCYFMHVSREANRAADLLAKHGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAAAGCTTAATACCGATGCAGCTTGTGGTGTCGCTAATCAATCCACCGGTTTGGGCTACCTTCTGAGGGATTCGTTGGGTTCAATTTCTGCGACTGGGTGCCAATTTCA
CCCTTCTCCCTGCAATTCCCTAATCGTAGAACTCATGGCTATTAAAGAAGGTCTTCTCTTTGCGATCTCAATTGGTTGTTCCAACCTCTCAGTGGAATCAGATTCTTGCA
TCTCAAACTCTTTAATAAATGGAGATCTGGACACTCTTGGCCCTGAGAAAGTTGTCCTTCATGATATTCACTCAACTTCTCGCAAATTTGAAGTCTGTTATTTCATGCAT
GTTTCACGGGAGGCGAATCGGGCGGCAGATCTTCTTGCCAAGCATGGTCTTCATGTTTGTAGCTCCATTGAATGGAAGCAAAGCTTTCCCCCTTGGCTTTTGCGTGTTGC
TGATCGG
mRNA sequenceShow/hide mRNA sequence
CTAAAGCTTAATACCGATGCAGCTTGTGGTGTCGCTAATCAATCCACCGGTTTGGGCTACCTTCTGAGGGATTCGTTGGGTTCAATTTCTGCGACTGGGTGCCAATTTCA
CCCTTCTCCCTGCAATTCCCTAATCGTAGAACTCATGGCTATTAAAGAAGGTCTTCTCTTTGCGATCTCAATTGGTTGTTCCAACCTCTCAGTGGAATCAGATTCTTGCA
TCTCAAACTCTTTAATAAATGGAGATCTGGACACTCTTGGCCCTGAGAAAGTTGTCCTTCATGATATTCACTCAACTTCTCGCAAATTTGAAGTCTGTTATTTCATGCAT
GTTTCACGGGAGGCGAATCGGGCGGCAGATCTTCTTGCCAAGCATGGTCTTCATGTTTGTAGCTCCATTGAATGGAAGCAAAGCTTTCCCCCTTGGCTTTTGCGTGTTGC
TGATCGG
Protein sequenceShow/hide protein sequence
LKLNTDAACGVANQSTGLGYLLRDSLGSISATGCQFHPSPCNSLIVELMAIKEGLLFAISIGCSNLSVESDSCISNSLINGDLDTLGPEKVVLHDIHSTSRKFEVCYFMH
VSREANRAADLLAKHGLHVCSSIEWKQSFPPWLLRVADR