; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS000600 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000600
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor IBH1
Genome locationscaffold93:217934..218377
RNA-Seq ExpressionMS000600
SyntenyMS000600
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR044549 - Transcription factor IBH1-like, bHLH domain
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575326.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. sororia]5.5e-3765.54Show/hide
Query:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDDQ
        MASKSG T + S+   LRLARTFLRS + IKSQ PA   +        RRI++ AYSSMAR AGPR AWARALLFKL+TRARHRTL+ R R+H R SDD+
Subjt:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDDQ

Query:  VGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAI-SHHLSSN
        VG+LRR++PGG +MDVCTLLEET  YI CLS QVKVMKAI  H  S+N
Subjt:  VGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAI-SHHLSSN

KAG7025295.1 Transcription factor IBH1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-4273.2Show/hide
Query:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSS-SLR---RRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRS
        MAS+SG T MNSS   LRLARTFLRS S+IKS+RP  TTA SRS+  LR   RRI+IAAYSSMAR AGP+RAWARALLFKL TRARH TLMRR R    S
Subjt:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSS-SLR---RRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRS

Query:  S--DDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSSN
        +  DD VG+LRR+LPGG  MDVCTLLEETA YIHCLS QVKVM AI+HHLS+N
Subjt:  S--DDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSSN

XP_008464343.1 PREDICTED: transcription factor IBH1 [Cucumis melo]2.0e-3970.27Show/hide
Query:  SKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRR---RIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDD
        SKS +T +NS+  R R ARTFLR  S+IKSQR +AT A +    L+R   RI++ AYSSMAR AGPRRAWARALLFKLQTR RHRTLMRR R    S DD
Subjt:  SKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRR---RIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDD

Query:  QVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLSS
        QVG+LRR+LPGG  MDVCTLLEETA+YIHCLSTQVKVMKAIS  HLS+
Subjt:  QVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLSS

XP_023005092.1 transcription factor IBH1 [Cucurbita maxima]1.4e-4070.59Show/hide
Query:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSS-SLR---RRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRS
        MA +SG+T MNSS   LRLARTFLRS S+IKS+RP  TTA SRS+  LR   RRI+IAAYSSMAR AGP+R WARALLFKL TRARHRT MRR      S
Subjt:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSS-SLR---RRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRS

Query:  S--DDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSSN
        +  DD VG+LRR++PGG  MDVCTLLEETA YIHCLS QVKVM AI+HHLS N
Subjt:  S--DDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSSN

XP_023548405.1 transcription factor IBH1 [Cucurbita pepo subsp. pepo]4.6e-3664.86Show/hide
Query:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDDQ
        MASKSG T + S+   LRLARTFLRS + IKSQ PA   +        RRI++ AYSSMARAAGPR AWARALLFKL+ RARHRTL+ R RYH   SDD+
Subjt:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDDQ

Query:  VGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAI-SHHLSSN
        VG+LRR++PGG  MDVC+LLEET  YI CL TQVKVMKAI  H  S+N
Subjt:  VGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAI-SHHLSSN

TrEMBL top hitse value%identityAlignment
A0A0A0KDQ3 Uncharacterized protein2.0e-3263.27Show/hide
Query:  SKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLR---RRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDD
        SKS +T +NS+  RL  ART             +AT A +    L+   RRI++AAYSSMAR AG RRAWARALLF+L TR RH+TLMRR R    SSDD
Subjt:  SKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLR---RRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDD

Query:  QVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLS
         VG+LRR+LPGG  MDVCTLLEETA+YIHCLSTQVKVMKAIS HHLS
Subjt:  QVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLS

A0A1S3CLD3 transcription factor IBH19.7e-4070.27Show/hide
Query:  SKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRR---RIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDD
        SKS +T +NS+  R R ARTFLR  S+IKSQR +AT A +    L+R   RI++ AYSSMAR AGPRRAWARALLFKLQTR RHRTLMRR R    S DD
Subjt:  SKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRR---RIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDD

Query:  QVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLSS
        QVG+LRR+LPGG  MDVCTLLEETA+YIHCLSTQVKVMKAIS  HLS+
Subjt:  QVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLSS

A0A5D3BPL2 Transcription factor IBH19.7e-4070.27Show/hide
Query:  SKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRR---RIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDD
        SKS +T +NS+  R R ARTFLR  S+IKSQR +AT A +    L+R   RI++ AYSSMAR AGPRRAWARALLFKLQTR RHRTLMRR R    S DD
Subjt:  SKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRR---RIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDD

Query:  QVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLSS
        QVG+LRR+LPGG  MDVCTLLEETA+YIHCLSTQVKVMKAIS  HLS+
Subjt:  QVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAIS-HHLSS

A0A6J1KS83 transcription factor IBH16.7e-4170.59Show/hide
Query:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSS-SLR---RRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRS
        MA +SG+T MNSS   LRLARTFLRS S+IKS+RP  TTA SRS+  LR   RRI+IAAYSSMAR AGP+R WARALLFKL TRARHRT MRR      S
Subjt:  MASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSS-SLR---RRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRS

Query:  S--DDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSSN
        +  DD VG+LRR++PGG  MDVCTLLEETA YIHCLS QVKVM AI+HHLS N
Subjt:  S--DDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSSN

A0A7N2RCD6 Uncharacterized protein2.3e-2548.95Show/hide
Query:  MNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRR-------SSDDQVG
        +N++  +++ AR F+R+L K++   P +++++       +RI+IAAYSSMA A G RRAW+RA+LFKL+ RARH  +MRR    +R           Q  
Subjt:  MNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRR-------SSDDQVG

Query:  RLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS
        +LR+++PGG AMD+C+LLEETAHYI CLSTQVKVM+ I+ HLS
Subjt:  RLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS

SwissProt top hitse value%identityAlignment
Q01I07 Transcription factor IBH15.9e-1036.65Show/hide
Query:  LARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRY--------------------------
        LA  FLR+LS+I    P     V+R +   R IR AAYSSMARAA PRRAW+RALL + + R R RTLMRR                             
Subjt:  LARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRY--------------------------

Query:  -------------HRRSSDDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAI
                      ++    +   LRR++PGG  M+  +LLEETA Y+  L  QV++M+ +
Subjt:  -------------HRRSSDDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAI

Q7XR02 Transcription factor IBH14.5e-1036.65Show/hide
Query:  LARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRY--------------------------
        LA  FLR+LS+I    P     V+R +   R IR AAYSSMARAA PRRAW+RALL +++ R R RTLMRR                             
Subjt:  LARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRY--------------------------

Query:  -------------HRRSSDDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAI
                      ++    +   LRR++PGG  M+  +LLEETA Y+  L  QV++M+ +
Subjt:  -------------HRRSSDDQVGRLRRVLPGGGAMDVCTLLEETAHYIHCLSTQVKVMKAI

Q9SKX1 Transcription factor IBH19.7e-1341.48Show/hide
Query:  FLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAA-GPRRAWARALLFKLQ---------TRARHRTLMRRHRYHRRSS--DDQVGRLRRVLPG
        FL+SLS ++ Q P  T    + +   R+I+ AAY SMARAA G  R W+RALL +           +R + +   +R R ++R+   ++   RLR ++PG
Subjt:  FLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAA-GPRRAWARALLFKLQ---------TRARHRTLMRRHRYHRRSS--DDQVGRLRRVLPG

Query:  GGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS
        GG M+   L+EETAHYI CLS QVKVM+ +   LS
Subjt:  GGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS

Arabidopsis top hitse value%identityAlignment
AT2G43060.1 ILI1 binding bHLH 16.9e-1441.48Show/hide
Query:  FLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAA-GPRRAWARALLFKLQ---------TRARHRTLMRRHRYHRRSS--DDQVGRLRRVLPG
        FL+SLS ++ Q P  T    + +   R+I+ AAY SMARAA G  R W+RALL +           +R + +   +R R ++R+   ++   RLR ++PG
Subjt:  FLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAA-GPRRAWARALLFKLQ---------TRARHRTLMRRHRYHRRSS--DDQVGRLRRVLPG

Query:  GGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS
        GG M+   L+EETAHYI CLS QVKVM+ +   LS
Subjt:  GGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCATGGCTTCTAAATCGGGTCTAACCCGGATGAATTCGTCCCCCGGTCGGCTCCGATTAGCCCGAACCTTCCTCCGATCGCTCTCCAAGATCAAATCCCAGAGACCGGC
AGCGACGACGGCGGTGTCTCGGTCGTCTTCTCTCAGACGGCGGATAAGAATAGCGGCCTACTCCTCCATGGCTCGTGCGGCTGGGCCGCGGCGGGCTTGGGCTAGAGCGC
TCCTCTTCAAGCTCCAGACTCGAGCCAGACATAGAACTCTGATGAGACGCCACCGTTACCACCGCCGCTCCTCGGACGACCAGGTTGGGAGGCTCCGCCGCGTGCTGCCG
GGCGGCGGGGCGATGGACGTGTGCACCTTGCTGGAGGAAACTGCCCACTACATCCATTGCCTCTCAACGCAGGTTAAGGTCATGAAAGCCATATCTCATCACTTGTCCTC
CAAT
mRNA sequenceShow/hide mRNA sequence
TCCATGGCTTCTAAATCGGGTCTAACCCGGATGAATTCGTCCCCCGGTCGGCTCCGATTAGCCCGAACCTTCCTCCGATCGCTCTCCAAGATCAAATCCCAGAGACCGGC
AGCGACGACGGCGGTGTCTCGGTCGTCTTCTCTCAGACGGCGGATAAGAATAGCGGCCTACTCCTCCATGGCTCGTGCGGCTGGGCCGCGGCGGGCTTGGGCTAGAGCGC
TCCTCTTCAAGCTCCAGACTCGAGCCAGACATAGAACTCTGATGAGACGCCACCGTTACCACCGCCGCTCCTCGGACGACCAGGTTGGGAGGCTCCGCCGCGTGCTGCCG
GGCGGCGGGGCGATGGACGTGTGCACCTTGCTGGAGGAAACTGCCCACTACATCCATTGCCTCTCAACGCAGGTTAAGGTCATGAAAGCCATATCTCATCACTTGTCCTC
CAAT
Protein sequenceShow/hide protein sequence
SMASKSGLTRMNSSPGRLRLARTFLRSLSKIKSQRPAATTAVSRSSSLRRRIRIAAYSSMARAAGPRRAWARALLFKLQTRARHRTLMRRHRYHRRSSDDQVGRLRRVLP
GGGAMDVCTLLEETAHYIHCLSTQVKVMKAISHHLSSN