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MS000603 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000603
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionpolcalcin Syr v 3-like
Genome locationscaffold93:260792..261043
RNA-Seq ExpressionMS000603
SyntenyMS000603
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150429.1 polcalcin Syr v 3-like [Momordica charantia]8.1e-3898.81Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK+L
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

XP_022929895.1 polcalcin Phl p 7-like [Cucurbita moschata]2.8e-3083.33Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        MA+    RAECERIFNRFD NGDG+ISLSELE+AL ALGSSSPEEVRRRMSEIDKDG+G+ISL+ELC+FQRANPDLMKEVCK+L
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

XP_022992461.1 polcalcin Phl p 7-like [Cucurbita maxima]6.9e-2982.14Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        MA+    RAECERIFNRFD NGDG+ISLSELE+AL ALGSSSPEEVRRRMSEIDKDG+G+ISL+EL +FQRANPDLMKEVCK+L
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

XP_023549323.1 polcalcin Phl p 7-like [Cucurbita pepo subsp. pepo]8.2e-3082.14Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        MA+    RAECERIFNRFD NGDG+ISLSELE+AL ALGSSSPEEVRRRMSEIDKDG+G+ISL+ELC+FQRANPDLMKEVC++L
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

XP_038886760.1 polcalcin Phl p 7-like [Benincasa hispida]1.6e-3084.52Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        MAD    R ECERIF RFDS+GDG+ISLSELESAL ALGSSSPEEVRRRMSEIDKDG+G+ISL+ELCDFQRANPDLMKEVCK+L
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

TrEMBL top hitse value%identityAlignment
A0A0A0KAW9 Uncharacterized protein1.0e-3084.52Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        MAD   NR ECERIF RFD NGDG+ISLSELE+AL ALGSS+PEEV RRMSEIDKDG+GYISLEELCDFQRANPDLMKEVCK+L
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

A0A5A7V7E6 Polcalcin Syr v 3-like2.8e-2881.48Show/hide
Query:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        D   + ECERIF RFD NGDG+ISLSELE+AL ALGSS+PEEV RRMSEIDKDG+G+ISLEELCDFQRANPDLMKEVCK+L
Subjt:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

A0A6J1DA15 polcalcin Syr v 3-like3.9e-3898.81Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK+L
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

A0A6J1EVJ6 polcalcin Phl p 7-like1.4e-3083.33Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        MA+    RAECERIFNRFD NGDG+ISLSELE+AL ALGSSSPEEVRRRMSEIDKDG+G+ISL+ELC+FQRANPDLMKEVCK+L
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

A0A6J1JTM0 polcalcin Phl p 7-like3.3e-2982.14Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL
        MA+    RAECERIFNRFD NGDG+ISLSELE+AL ALGSSSPEEVRRRMSEIDKDG+G+ISL+EL +FQRANPDLMKEVCK+L
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL

SwissProt top hitse value%identityAlignment
O81092 Polcalcin Ole e 32.3e-1960.98Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK
        MADD +  AE ERIF RFD+NGDG+IS SEL   L  LGS +PEE++R M+EID DGDG+IS EE   F RAN  L+K+V K
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK

O82040 Polcalcin Phl p 75.7e-1859.76Show/hide
Query:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK
        MADD       ERIF RFD+NGDG+ISLSEL  AL  LGS+S +EV+R M+EID DGDG+I   E   F  ANP LMK+V K
Subjt:  MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK

P58171 Polcalcin Syr v 36.7e-1963.51Show/hide
Query:  AECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK
        AE ERIF RFD+NGDG+IS SEL   L  LGS +PEE++R M+EID DGDG+IS EE  DF RAN  L+K+V K
Subjt:  AECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK

Q39419 Polcalcin Bet v 46.7e-1959.04Show/hide
Query:  MADD-GRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK
        MADD  +++AE ERIF RFD+NGDG+IS +EL  AL  LGS +P+EV+  M+EID DGDG+IS +E  DF RAN  L+K+V K
Subjt:  MADD-GRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK

Q84V36 Polcalcin Che a 32.0e-1860Show/hide
Query:  DDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK
        D  ++ A+ ERIF RFD+NGDG+IS SEL  AL  LGS +P+EVRR M+EID DGDG+IS +E  DF RAN  L+K+V K
Subjt:  DDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein1.7e-0943.66Show/hide
Query:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPE-EVRRRMSEIDKDGDGYISLEELCDFQRAN
        D  N  E +++F++FDSNGDG+IS+ EL     A+G+S  E E+ R + E+D D DGYI+L+E     R++
Subjt:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPE-EVRRRMSEIDKDGDGYISLEELCDFQRAN

AT1G18210.2 Calcium-binding EF-hand family protein1.7e-0943.66Show/hide
Query:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPE-EVRRRMSEIDKDGDGYISLEELCDFQRAN
        D  N  E +++F++FDSNGDG+IS+ EL     A+G+S  E E+ R + E+D D DGYI+L+E     R++
Subjt:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPE-EVRRRMSEIDKDGDGYISLEELCDFQRAN

AT1G24620.1 EF hand calcium-binding protein family2.2e-0943.28Show/hide
Query:  ECERIFNRFDSNGDGQISLSELESALSALGSSSP-EEVRRRMSEIDKDGDGYISLEELCDFQRANPD
        E E +F +FD NGDG+IS  EL + +++LG   P EE+ + ++EID+ GDGYI+ EE  +      D
Subjt:  ECERIFNRFDSNGDGQISLSELESALSALGSSSP-EEVRRRMSEIDKDGDGYISLEELCDFQRANPD

AT3G03430.1 Calcium-binding EF-hand family protein3.4e-1855.7Show/hide
Query:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK
        D   +AE +RIF +FD+NGDG+IS +EL  AL  LGS + E+++R M+EID DGDGYIS +E  DF  AN  LMK+V K
Subjt:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK

AT5G17480.1 pollen calcium-binding protein 15.9e-1855.7Show/hide
Query:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK
        D   +AE +RIF +FD+NGDG+IS +ELE AL  LGS + ++V+R M+EID DGDG IS +E  DF  AN  LMK+V K
Subjt:  DGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACGATGGGCGAAACAGGGCGGAATGCGAGCGAATCTTCAACCGCTTCGACAGCAACGGCGACGGCCAGATCTCGCTGTCGGAGCTTGAGAGCGCTCTCAGCGC
CCTCGGCTCCTCCTCGCCGGAGGAGGTCCGGCGGCGGATGTCGGAGATCGACAAGGACGGCGACGGCTACATTTCGCTCGAAGAACTCTGCGATTTCCAGAGGGCCAATC
CCGATTTGATGAAGGAGGTTTGCAAGAAGCTT
mRNA sequenceShow/hide mRNA sequence
ATGGCGGACGATGGGCGAAACAGGGCGGAATGCGAGCGAATCTTCAACCGCTTCGACAGCAACGGCGACGGCCAGATCTCGCTGTCGGAGCTTGAGAGCGCTCTCAGCGC
CCTCGGCTCCTCCTCGCCGGAGGAGGTCCGGCGGCGGATGTCGGAGATCGACAAGGACGGCGACGGCTACATTTCGCTCGAAGAACTCTGCGATTTCCAGAGGGCCAATC
CCGATTTGATGAAGGAGGTTTGCAAGAAGCTT
Protein sequenceShow/hide protein sequence
MADDGRNRAECERIFNRFDSNGDGQISLSELESALSALGSSSPEEVRRRMSEIDKDGDGYISLEELCDFQRANPDLMKEVCKKL