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MS000606 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000606
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II protein D1
Genome locationscaffold93:303493..303608
RNA-Seq ExpressionMS000606
SyntenyMS000606
Gene Ontology termsGO:0009635 - response to herbicide (biological process)
GO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0010242 - oxygen evolving activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR000484 - Photosynthetic reaction centre, L/M
IPR036854 - Photosystem II protein D1/D2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF6139726.1 hypothetical protein GIB67_006674 [Kingdonia uniflora]3.6e-0982.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E AS DEWLY GGPYE IVL+FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
QBP05290.1 photosystem II protein D1, partial [Selaginella chrysocaulos]9.5e-1084.62Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E ASPDEWLY GGPYE IVL FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
RZC81255.1 hypothetical protein C5167_043827 [Papaver somniferum]3.6e-0982.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI EV S DEWLY GGPYE IVL+FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
RZC83510.1 hypothetical protein C5167_046296 [Papaver somniferum]1.2e-0984.62Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI EVAS DEWLY GGPYE IVL+FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
RZC92521.1 hypothetical protein C5167_041860 [Papaver somniferum]3.6e-0982.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI EV S DEWLY GGPYE IVL+FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
TrEMBL top hitse value%identityAlignment
A0A482IBB2 Photosystem II protein D1 (Fragment)4.6e-1084.62Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E ASPDEWLY GGPYE IVL FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
A0A482IEU6 Photosystem II protein D1 (Fragment)4.6e-1084.62Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E ASPDEWLY GGPYE IVL FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
A0A4Y7LAH5 Uncharacterized protein1.7e-0982.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI EV S DEWLY GGPYE IVL+FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
A0A4Y7LAP4 Photosystem II protein D11.7e-0982.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI EV S DEWLY GGPYE IVL+FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
A0A4Y7LFU4 32 kDa thylakoid membrane protein6.0e-1084.62Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI EVAS DEWLY GGPYE IVL+FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
SwissProt top hitse value%identityAlignment
A1E9Y8 Photosystem II protein D11.4e-1182.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
A4QJ96 Photosystem II protein D11.4e-1182.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
A4QJI0 Photosystem II protein D11.4e-1182.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
Q3V554 Photosystem II protein D11.4e-1182.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
Q85C23 Photosystem II protein D11.4e-1182.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
Arabidopsis top hitse value%identityAlignment
ATCG00020.1 photosystem II reaction center protein A9.7e-1382.05Show/hide
Query:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL
        PI E AS DEWLY GGPYE IVL FLLGVACYMGREW L
Subjt:  PISEVASPDEWLYKGGPYE-IVLFFLLGVACYMGREWHL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCGATATCGGAAGTTGCTTCCCCTGATGAATGGTTATACAAAGGTGGTCCTTATGAGATTGTTCTATTCTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGCA
CCTC
mRNA sequenceShow/hide mRNA sequence
CCGATATCGGAAGTTGCTTCCCCTGATGAATGGTTATACAAAGGTGGTCCTTATGAGATTGTTCTATTCTTCTTACTTGGTGTAGCATGTTACATGGGTCGAGAGTGGCA
CCTC
Protein sequenceShow/hide protein sequence
PISEVASPDEWLYKGGPYEIVLFFLLGVACYMGREWHL