CuGenDBv2

Gene ID	MS000616
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold93:431500..431796
RNA-Seq Expression	MS000616
Synteny	MS000616
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QHQ97342.1 hypothetical protein RF2 [Rosa lucieae]

6.9e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

6.9e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

WP_165486117.1 Ycf2, partial [Candidatus Frankia meridionalis]

6.9e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

YP_009500533.1 Ycf2 [Rosa chinensis var. spontanea]

6.9e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

YP_009865147.1 hypothetical protein RF2 [Alchemilla argyrophylla]

6.9e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

TrEMBL top hits

e value

%identity

Alignment

A0A067YP60 Protein Ycf2

3.3e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

A0A515BL03 Protein Ycf2

3.3e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

A0A7D3UT60 Protein Ycf2

3.3e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

A0A7L8XKP9 Protein Ycf2

3.3e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

F1KLG5 Protein Ycf2

3.3e-44

94.95

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+GGSYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

SwissProt top hits

e value

%identity

Alignment

A4GYV4 Protein Ycf2

6.5e-45

91.92

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNV LSNC IDPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

B1A978 Protein Ycf2

8.4e-45

91.92

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNC IDPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

Q09MB4 Protein Ycf2

8.4e-45

91.92

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNC IDPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

Q09WV7 Protein Ycf2

1.7e-45

92.93

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSA HRQTWDLRSQVRSVQDHGILFYQIGR VAQNVLLSNCSIDPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

Q14F97 Protein Ycf2

6.5e-45

91.92

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNV LSNC IDPISIYMKKKSCN+G SYLYKW FELGTSMKKLTILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

3.0e-45

89.9

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVL+SNC IDPISIYMKKKSCN+G SYLYKW FELGTSMKK TILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

3.0e-45

89.9

Show/hide

Query:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL
        L  SITQKKSIIDTN IRSALHRQTWDLRSQVRSVQDHGILFYQIGR VAQNVL+SNC IDPISIYMKKKSCN+G SYLYKW FELGTSMKK TILLYL
Subjt:  LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TTACTATNTAGTATTACGCAGAAGAAATCAATTATAGACACTAATATAATTAGATCTGCTCTTCATAGACAAACTTGGGATTTGCGATCCCAGGTAAGATCGGTTCAGGA
TCATGGGATCCTTTTCTATCAGATAGGAAGGGTTGTTGCACAAAATGTACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGTAACA
AAGGGGGTTCTTATTTGTACAAATGGTGCTTCGAACTTGGAACGAGCATGAAGAAATTAACGATACTTCTTTATCTT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

LLXSITQKKSIIDTNIIRSALHRQTWDLRSQVRSVQDHGILFYQIGRVVAQNVLLSNCSIDPISIYMKKKSCNKGGSYLYKWCFELGTSMKKLTILLYL

MS000616 (gene) of Bitter gourd (TR) v1 genome