CuGenDBv2

Gene ID	MS000617
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
Genome location	scaffold93:431817..432191
RNA-Seq Expression	MS000617
Synteny	MS000617
Gene Ontology terms	GO:0006633 - fatty acid biosynthetic process (biological process) GO:2001295 - malonyl-CoA biosynthetic process (biological process) GO:0009317 - acetyl-CoA carboxylase complex (cellular component) GO:0009570 - chloroplast stroma (cellular component) GO:0003989 - acetyl-CoA carboxylase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016743 - carboxyl- or carbamoyltransferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

QJA16152.1 acetyl-CoA carboxylase carboxyltransferase beta subunit [Siraitia grosvenorii]

7.8e-53

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSS YSIYLDIEN+IFEIDNDPSFVSELES+FYSFRNSTY+NNVSKSDDSH        Y+ YMYDTKYSWNNHINSCIDSYLRAQICIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG HNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

YP_009456070.1 acetyl-CoA carboxylase beta subunit [Momordica charantia]

3.4e-56

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINS          CIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSGIHNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

YP_009560844.1 AccD [Trichosanthes kirilowii]

1.0e-52

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSS YSIYLDIENQIFEIDNDPSFVSELES+FYSFRNSTY+N+VSKSDDSH        Y+ YMYDTKYSWNNHINSCIDSYLRAQICIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG HNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

YP_009674400.1 acetyl-CoA carboxylase beta subunit [Siraitia grosvenorii]

7.8e-53

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSS YSIYLDIEN+IFEIDNDPSFVSELES+FYSFRNSTY+NNVSKSDDSH        Y+ YMYDTKYSWNNHINSCIDSYLRAQICIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG HNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

YP_009752844.1 acetyl-CoA carboxylase subunit beta [Baijiania yunnanensis]

7.8e-53

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSS YSIYLDIEN+IFEIDNDPSFVSELES+FYSFRNSTY+NNVSKSDDSH        Y+ YMYDTKYSWNNHINSCIDSYLRAQICIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG HNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

TrEMBL top hits

e value

%identity

Alignment

A0A2I6BZY9 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

1.6e-56

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINS          CIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSGIHNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

A0A515BLM9 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

3.8e-53

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSS YSIYLDIEN+IFEIDNDPSFVSELES+FYSFRNSTY+NNVSKSDDSH        Y+ YMYDTKYSWNNHINSCIDSYLRAQICIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG HNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

A0A6C0UEJ7 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

3.8e-53

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSS YSIYLDIEN+IFEIDNDPSFVSELES+FYSFRNSTY+NNVSKSDDSH        Y+ YMYDTKYSWNNHINSCIDSYLRAQICIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG HNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

A0A6H0EX14 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

3.8e-53

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSS YSIYLDIEN+IFEIDNDPSFVSELES+FYSFRNSTY+NNVSKSDDSH        Y+ YMYDTKYSWNNHINSCIDSYLRAQICIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG HNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

A0A6H1XKV9 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

3.8e-53

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSS YSIYLDIEN+IFEIDNDPSFVSELES+FYSFRNSTY+NNVSKSDDSH        Y+ YMYDTKYSWNNHINSCIDSYLRAQICIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG HNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

SwissProt top hits

e value

%identity

Alignment

A0ZZ44 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

1.3e-39

67.2

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFL+RDSN   YSIY D ENQIFE++ND SF+SELES FYS+ NS+Y NN SK+D+ HY+  +YDN      DT   WNNHINSCIDSYLR+QICIDS I
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG  N +D+YI +YICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

B1A944 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

3.4e-43

72.8

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSN   YSIY DIEN  FEIDND SF+SELES FYS+RNS+Y NN SKSDD H        Y+ YMYDTKYSW NHINSCIDSYLR+QICIDS I
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG  NY+DSYIY+YIC E G SSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

Q09X08 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

8.7e-39

65.6

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSN   Y+IY DIENQIFEIDN  SF+SE E++FYS++NS+Y NNVSK+DD          Y+ Y+YDT+YSWNNHINSCI SYLR QICIDS I
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        L+   NY+D+YIY+YICGE  NS+E
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

Q2L915 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

1.3e-39

67.2

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFL+RDSN   YSIY D ENQIFE++ND SF+SELES FYS+ NS+Y NN SK+D+ HY+  +YDN      DT   WNNHINSCIDSYLR+QICIDS I
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG  N +D+YI +YICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

Q2QD80 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

3.0e-55

86.4

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TFLVRDSNSS YSIYLDIENQIFEIDNDPSFVSELES+FYSFRNSTY+NN+SK+DDSH        Y+ YMYDTKYSWNNHINSCIDSYLR QICIDSYI
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        LSG HNYSDSYIYSYICGEGGNSSE
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta

3.9e-26

50.4

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Query:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI
        TF VRDSN + YSI+ D + +IFEIDND    S+LE  FYS+ +S+Y NN SK D+  +       Y+ Y+ DTKY+  NHINSCIDSY R+ ICID+  
Subjt:  TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYI

Query:  LSGIHNYSDSYIYSYICGEGGNSSE
        L   +N+++SYIY++IC E G   E
Subjt:  LSGIHNYSDSYIYSYICGEGGNSSE

Sequences

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CDS sequence

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ACTTTTTTAGTTAGGGATAGTAATAGCAGCTGTTATTCCATATATTTGGATATTGAAAATCAAATTTTTGAGATTGACAATGATCCTTCTTTTGTAAGTGAACTAGAAAG
TGCTTTTTATAGTTTTCGTAACTCTACTTATAAAAATAATGTATCTAAGAGTGATGATTCCCACTATAATGGTTACATGTATGATAACTATAATGGTTACATGTATGATA
CTAAATATAGTTGGAATAATCACATTAATAGTTGCATTGACAGTTATCTTCGGGCTCAAATCTGTATTGATAGTTACATTTTAAGTGGTATTCACAATTACAGTGACAGT
TACATTTATAGTTACATTTGTGGTGAAGGTGGAAATAGTAGTGAA

mRNA sequence

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Protein sequence

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TFLVRDSNSSCYSIYLDIENQIFEIDNDPSFVSELESAFYSFRNSTYKNNVSKSDDSHYNGYMYDNYNGYMYDTKYSWNNHINSCIDSYLRAQICIDSYILSGIHNYSDS
YIYSYICGEGGNSSE

MS000617 (gene) of Bitter gourd (TR) v1 genome