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MS000633 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000633
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionribosomal protein L5
Genome locationscaffold93:595945..596103
RNA-Seq ExpressionMS000633
SyntenyMS000633
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFY03535.1 ribosomal protein L5, partial [Lagenaria siceraria]1.0e-0987.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
XP_022933170.1 uncharacterized protein LOC111440022 [Cucurbita moschata]1.0e-0987.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
XP_023512239.1 uncharacterized protein LOC111777027 [Cucurbita pepo subsp. pepo]1.0e-0987.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
YP_003587347.1 ribosomal protein L5 [Cucurbita pepo]1.0e-0987.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
YP_009913650.1 ribosomal protein L5 [Luffa acutangula]1.0e-0987.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
TrEMBL top hitse value%identityAlignment
A0A6J1F471 uncharacterized protein LOC1114400224.9e-1087.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
A0A7D5Y005 Ribosomal protein L54.9e-1087.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
D5I3C5 Ribosomal protein L54.9e-1087.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
D5I3H1 Ribosomal protein L54.9e-1087.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
K7Z325 Ribosomal protein L5 (Fragment)4.9e-1087.5Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
SwissProt top hitse value%identityAlignment
P42793 60S ribosomal protein L5, mitochondrial8.6e-1285Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFL SNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
P49388 60S ribosomal protein L5, mitochondrial8.6e-1285Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFL SNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
P51409 60S ribosomal protein L5, mitochondrial2.8e-1077.78Show/hide
Query:  GGTLSKRGSTGKSFRSNPFLESNKD-KGYVSDLAQQGTLRRHGMS
        G  L +R STGKSFRSNPFL SNKD KGYVSDLA+Q TLR HGMS
Subjt:  GGTLSKRGSTGKSFRSNPFLESNKD-KGYVSDLAQQGTLRRHGMS
Q05492 60S ribosomal protein L5, mitochondrial6.6e-1285Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFLESNKDKGYVSDLA+Q  LR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
Arabidopsis top hitse value%identityAlignment
AT2G07725.1 Ribosomal L5P family protein6.1e-1385Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFL SNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
ATMG00210.1 ribosomal protein L56.1e-1385Show/hide
Query:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS
        ++RGSTGKSFRSNPFL SNKDKGYVSDLA+Q TLR HGMS
Subjt:  SKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGTGGCACTCGACGAAAGGGGGGCACACTGAGCAAGAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGA
CCTAGCACAACAAGGCACTCTTCGAAGGCATGGAATGTCGACTATTTTT
mRNA sequenceShow/hide mRNA sequence
CGTGGCACTCGACGAAAGGGGGGCACACTGAGCAAGAGGGGTTCGACAGGAAAGTCGTTTCGATCCAATCCATTCTTGGAGTCAAATAAAGACAAAGGATATGTCAGTGA
CCTAGCACAACAAGGCACTCTTCGAAGGCATGGAATGTCGACTATTTTT
Protein sequenceShow/hide protein sequence
RGTRRKGGTLSKRGSTGKSFRSNPFLESNKDKGYVSDLAQQGTLRRHGMSTIF