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MS000643 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000643
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncationic amino acid transporter 6, chloroplastic
Genome locationscaffold93:774666..774914
RNA-Seq ExpressionMS000643
SyntenyMS000643
Gene Ontology termsGO:0006865 - amino acid transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK11776.1 cationic amino acid transporter 6 [Cucumis melo var. makuwa]8.1e-1450.51Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY+ +G  +PRP LSFL SFSLTAII T               L++T  +   I LIF+C+VPQA K EFWGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
XP_008456609.1 PREDICTED: cationic amino acid transporter 6, chloroplastic [Cucumis melo]8.1e-1450.51Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY+ +G  +PRP LSFL SFSLTAII T               L++T  +   I LIF+C+VPQA K EFWGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
XP_022133543.1 cationic amino acid transporter 7, chloroplastic-like, partial [Momordica charantia]4.6e-1755.56Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY++VGR DPRP LSFL SFSLTAII T               L++T FI  A+ LIF+C+VPQA+K EFWGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
XP_022939746.1 cationic amino acid transporter 6, chloroplastic-like [Cucurbita moschata]1.8e-1350.51Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY+V+G  +PRP LSFL SFSLTAII T               L+IT  +  AI LIF+C+ PQA K + WGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
XP_022992703.1 cationic amino acid transporter 6, chloroplastic-like [Cucurbita maxima]1.8e-1350.51Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY+V+G  +PRP LSFL SFSLTAII T               L++T  I  AI LIF+C+ PQA K + WGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
TrEMBL top hitse value%identityAlignment
A0A1S3C3M2 cationic amino acid transporter 6, chloroplastic3.9e-1450.51Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY+ +G  +PRP LSFL SFSLTAII T               L++T  +   I LIF+C+VPQA K EFWGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
A0A5D3CMX6 Cationic amino acid transporter 63.9e-1450.51Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY+ +G  +PRP LSFL SFSLTAII T               L++T  +   I LIF+C+VPQA K EFWGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
A0A6J1BZE8 cationic amino acid transporter 7, chloroplastic-like2.2e-1755.56Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY++VGR DPRP LSFL SFSLTAII T               L++T FI  A+ LIF+C+VPQA+K EFWGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
A0A6J1FGS4 cationic amino acid transporter 6, chloroplastic-like8.7e-1450.51Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY+V+G  +PRP LSFL SFSLTAII T               L+IT  +  AI LIF+C+ PQA K + WGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
A0A6J1K008 cationic amino acid transporter 6, chloroplastic-like8.7e-1450.51Show/hide
Query:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        +C+ TL + +  ANAVI+ RY+V+G  +PRP LSFL SFSLTAII T               L++T  I  AI LIF+C+ PQA K + WGVPL PWIP
Subjt:  LCLHTLSLLH-GANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
SwissProt top hitse value%identityAlignment
Q9LZ20 Cationic amino acid transporter 6, chloroplastic9.6e-1041.38Show/hide
Query:  ANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        ANA+I  RY+ VG   P P L FL  FS+T+++ T               L  +  +  AI+L F C+VPQA+K E WGVP  PW P
Subjt:  ANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
Q9SQZ0 Cationic amino acid transporter 7, chloroplastic7.9e-1247.13Show/hide
Query:  ANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        ANAVI  RY+ VG  +P P LSFL  FS+T+I+ T               L  +T    AI+ IF+C+VPQA+  EFWGVPL PW P
Subjt:  ANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
Arabidopsis top hitse value%identityAlignment
AT3G10600.1 cationic amino acid transporter 75.6e-1347.13Show/hide
Query:  ANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        ANAVI  RY+ VG  +P P LSFL  FS+T+I+ T               L  +T    AI+ IF+C+VPQA+  EFWGVPL PW P
Subjt:  ANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
AT5G04770.1 cationic amino acid transporter 66.8e-1141.38Show/hide
Query:  ANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP
        ANA+I  RY+ VG   P P L FL  FS+T+++ T               L  +  +  AI+L F C+VPQA+K E WGVP  PW P
Subjt:  ANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILT---------------LNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGTGTTTGCATACACTCAGTCTTCTACATGGTGCAAACGCTGTTATTCATTGGCGTTATATTGTGGTCGGAAGGATTGATCCACGTCCGATGTTATCCTTCCTCCGATC
ATTCTCACTCACTGCCATCATATTAACTCTCAACATCACTACTTTCATCACCAACGCTATCTTGCTAATCTTCTATTGCATGGTACCTCAGGCACAGAAGCTCGAATTCT
GGGGGGTCCCTTTAACACCATGGATACCT
mRNA sequenceShow/hide mRNA sequence
TTGTGTTTGCATACACTCAGTCTTCTACATGGTGCAAACGCTGTTATTCATTGGCGTTATATTGTGGTCGGAAGGATTGATCCACGTCCGATGTTATCCTTCCTCCGATC
ATTCTCACTCACTGCCATCATATTAACTCTCAACATCACTACTTTCATCACCAACGCTATCTTGCTAATCTTCTATTGCATGGTACCTCAGGCACAGAAGCTCGAATTCT
GGGGGGTCCCTTTAACACCATGGATACCT
Protein sequenceShow/hide protein sequence
LCLHTLSLLHGANAVIHWRYIVVGRIDPRPMLSFLRSFSLTAIILTLNITTFITNAILLIFYCMVPQAQKLEFWGVPLTPWIP