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MS000644 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000644
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal L18p/L5e family protein
Genome locationscaffold93:778476..778853
RNA-Seq ExpressionMS000644
SyntenyMS000644
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]2.4e-4982.54Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MS ++ HLL++V+SCRKI+AQVTNPA+SSI+AMASSSEQEFVAY RSKL+RFPRSNNFWDSK+ASRVGEKLG RL EIGVSDV+IDL EELSRP YYRKM
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTGAI
        VLPLFDSV+RSGVA+DGAE LGTG+I
Subjt:  VLPLFDSVRRSGVAIDGAENLGTGAI
XP_022150463.1 uncharacterized protein LOC111018600 [Momordica charantia]4.8e-5896.83Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MSRSRRHLL+VVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDS IASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTGAI
        VLPLFDSVRRSGVAIDGAENLGTG +
Subjt:  VLPLFDSVRRSGVAIDGAENLGTGAI
XP_038884095.1 uncharacterized protein LOC120075027 isoform X2 [Benincasa hispida]9.0e-4983.87Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MS S+ HLL++V+SCRKI+AQVTNPA+SSIVAMASSSEQEFVAY RSKL+RFPRSNNFWDSK+ASRVGEKLG RL EIGVSDV+IDL EE SRP YYRKM
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTG
        VLPLFDSV+RSGVA+DGAE LGTG
Subjt:  VLPLFDSVRRSGVAIDGAENLGTG
XP_038884096.1 uncharacterized protein LOC120075027 isoform X3 [Benincasa hispida]9.0e-4983.87Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MS S+ HLL++V+SCRKI+AQVTNPA+SSIVAMASSSEQEFVAY RSKL+RFPRSNNFWDSK+ASRVGEKLG RL EIGVSDV+IDL EE SRP YYRKM
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTG
        VLPLFDSV+RSGVA+DGAE LGTG
Subjt:  VLPLFDSVRRSGVAIDGAENLGTG
XP_038884098.1 uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]9.0e-4983.87Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MS S+ HLL++V+SCRKI+AQVTNPA+SSIVAMASSSEQEFVAY RSKL+RFPRSNNFWDSK+ASRVGEKLG RL EIGVSDV+IDL EE SRP YYRKM
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTG
        VLPLFDSV+RSGVA+DGAE LGTG
Subjt:  VLPLFDSVRRSGVAIDGAENLGTG
TrEMBL top hitse value%identityAlignment
A0A0A0KE39 Uncharacterized protein1.1e-4982.54Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MS ++ HLL++V+SCRKI+AQVTNPA+SSI+AMASSSEQEFVAY RSKL+RFPRSNNFWDSK+ASRVGEKLG RL EIGVSDV+IDL EELSRP YYRKM
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTGAI
        VLPLFDSV+RSGVA+DGAE LGTG+I
Subjt:  VLPLFDSVRRSGVAIDGAENLGTGAI
A0A1S4DVU4 uncharacterized protein LOC1034886721.8e-4779.37Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MS ++ HLL++V+SCRKI+AQVTNPA+SSI+AMASSSEQEFVAY RSKL+RFPRSNNFWDSK+ASRVG KLG RL EIGVSDV+IDL EELSRP YYRKM
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTGAI
        VLPLFDSV+RSG+A+DG E LG G+I
Subjt:  VLPLFDSVRRSGVAIDGAENLGTGAI
A0A5D3BWW4 Uncharacterized protein1.8e-4779.37Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MS ++ HLL++V+SCRKI+AQVTNPA+SSI+AMASSSEQEFVAY RSKL+RFPRSNNFWDSK+ASRVG KLG RL EIGVSDV+IDL EELSRP YYRKM
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTGAI
        VLPLFDSV+RSG+A+DG E LG G+I
Subjt:  VLPLFDSVRRSGVAIDGAENLGTGAI
A0A6J1D9I9 uncharacterized protein LOC1110186002.3e-5896.83Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MSRSRRHLL+VVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDS IASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTGAI
        VLPLFDSVRRSGVAIDGAENLGTG +
Subjt:  VLPLFDSVRRSGVAIDGAENLGTGAI
A0A6J1EVG7 uncharacterized protein LOC1114363403.1e-4780.16Show/hide
Query:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM
        MS ++ HLL++V+SCRKI+AQVTNP +S+I+AMASSSEQEFVAYNRSKL+RFPRSNNFWDSKIASRVGEKLG RL EIGVSDV+IDL EELSRP  YR  
Subjt:  MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKM

Query:  VLPLFDSVRRSGVAIDGAENLGTGAI
        VLPLFDSVRRSGVA++GAE LG+GAI
Subjt:  VLPLFDSVRRSGVAIDGAENLGTGAI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G43310.1 Ribosomal L18p/L5e family protein1.3e-4069.23Show/hide
Query:  RRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPL
        R HLL++V+SCRKI+AQVT P SS+I+AMASSSEQEF+A +R+ L RFP SN+FWDSK ASRVGEKLGLRL E+GV  V ID  EE+SRP ++RK VLPL
Subjt:  RRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPL

Query:  FDSVRRSGVAIDGAENL
        FDSVRR+G+ +DG E L
Subjt:  FDSVRRSGVAIDGAENL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGAAGCCGGAGGCACCTCCTCAAAGTGGTTGTTTCCTGCCGGAAAATCAGCGCTCAGGTCACAAATCCGGCGAGCTCCTCCATCGTCGCCATGGCCTCATCCTC
GGAGCAGGAATTCGTGGCCTACAACCGATCGAAACTCAACCGCTTCCCCCGATCCAACAACTTCTGGGACTCCAAGATCGCCTCCCGCGTCGGCGAAAAGCTAGGGCTCC
GCCTCACCGAGATCGGCGTCTCCGATGTTCAGATCGACCTCCGGGAAGAGCTCTCGCGCCCTGCTTACTACAGGAAGATGGTGCTGCCGCTGTTCGATTCCGTGCGCCGC
TCCGGCGTCGCCATTGACGGAGCTGAGAACCTTGGAACAGGTGCGATC
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGAAGCCGGAGGCACCTCCTCAAAGTGGTTGTTTCCTGCCGGAAAATCAGCGCTCAGGTCACAAATCCGGCGAGCTCCTCCATCGTCGCCATGGCCTCATCCTC
GGAGCAGGAATTCGTGGCCTACAACCGATCGAAACTCAACCGCTTCCCCCGATCCAACAACTTCTGGGACTCCAAGATCGCCTCCCGCGTCGGCGAAAAGCTAGGGCTCC
GCCTCACCGAGATCGGCGTCTCCGATGTTCAGATCGACCTCCGGGAAGAGCTCTCGCGCCCTGCTTACTACAGGAAGATGGTGCTGCCGCTGTTCGATTCCGTGCGCCGC
TCCGGCGTCGCCATTGACGGAGCTGAGAACCTTGGAACAGGTGCGATC
Protein sequenceShow/hide protein sequence
MSRSRRHLLKVVVSCRKISAQVTNPASSSIVAMASSSEQEFVAYNRSKLNRFPRSNNFWDSKIASRVGEKLGLRLTEIGVSDVQIDLREELSRPAYYRKMVLPLFDSVRR
SGVAIDGAENLGTGAI