CuGenDBv2

Gene ID	MS000646
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RRM domain-containing protein
Genome location	scaffold93:794488..796101
RNA-Seq Expression	MS000646
Synteny	MS000646
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

4.4e-79

78.39

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSSQCALVEMKDSKEA SVISVIA+FPFM+SGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
        VEMFDDRPIKPG KISF WL ++DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LK NYKK+EIVE VMTDGTARRLA+ Y+MRV DD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.4e-79

78.39

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSSQCALVEMKDSKEA SVISVIA+FPFM+SGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
        VEMFDDRPIKPG KISF WL ++DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LK NYKK+EIVE VMTDGTARRLA+ Y+MRV DD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

XP_022150340.1 uncharacterized protein LOC111018537 [Momordica charantia]

1.8e-96

94.47

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKD KEAKSVISVIAEFPFMISGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
        VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET      Q ++EEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

4.4e-79

78.39

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSSQCALVEMKDSKEA SVISVIA+FPFM+SGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
        VEMFDDRPIKPG KISF WL ++DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LK NYKK+EIVE VMTDGTARRLA+ Y+MRV DD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

9.0e-80

79.4

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGS  +EQFA FEEKVKRTVYVDNLSP VTEPV+RTALDQFGTVV V FIPNY EP+N+SQCALVEMKD KEAKSVISVIA+FPFM+SGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
        VEMFDDRP+KPG KISF+WL+++DPDF+VAKKMKL TRKH AE          +EEKLAKQQQE LKGNYKK+EIVESVM DGTARRLAK Y+MRV DD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

3.4e-77

76.88

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGS  +EQFA FEEKVKRTVYVDNLS QVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKDSKEAKSVI+VIA+FPFM+SGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET---LAQGM-KEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
        VEMFDDRP+KPG KISF WL+ +DPDF+VA+++K  ++KH AE    + Q M +EEKLAKQQQE LKGNYKK+EIV+SVM DGTARRLAK Y+MR+ DD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET---LAQGM-KEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

A0A1S3B3J3 uncharacterized protein LOC103485592

1.8e-78

77.39

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGSA +EQF+ FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKDSKEAKSVI+VIA+FPFM+SGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET---LAQGM-KEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
         EMFDDRP+KPG KISF WL+ +DPDF+VA+++K  T+KH AE    L Q + +EEKLAKQQQE L+GNYKK+EIV+SVM DGTARRLAK Y+MRV DD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET---LAQGM-KEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

A0A6J1DB90 uncharacterized protein LOC111018537

8.7e-97

94.47

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKD KEAKSVISVIAEFPFMISGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
        VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET      Q ++EEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

A0A6J1H6P8 uncharacterized protein LOC111460615

1.4e-78

77.39

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGSAT+EQ+  FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSSQCALVEMKDSKEA SVIS+IA+FPFM+SGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
        VEMFDDRPIKPG KISF WL ++DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LK NYKK+EIVE VMTDGTARRLA+ Y+MRV DD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

2.8e-79

77.89

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        MGSAT+EQ+A FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPN+ EP+NSSQCALVEMKDSKEA SVISVI++FPFM+SGMPRPVRA PAE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD
        VEMFDDRPIKPG KISF WL + DPDF+VAKKMK  T++H AE       Q ++EEKLAKQQQ+ LKGNYKK+EI+E VMTDGTARRLA+ Y+MRV DD
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETL----AQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

8.4e-44

45.13

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        M +  E  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV +V FIPNY+ P       LVEM++ +  ++VIS +++ PFM++GMPRPVRA  AE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET--LAQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVF
          MF D+P KPG  + F W+  NDPDF  A+++K   RKH+AE   + +  + EKL+KQQ E    ++KK E+++ ++ DG A++LA  YD++ F
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET--LAQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVF

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

6.5e-44

45.69

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Query:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE
        M +  E  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV +V FIPNY+ P       LVEM++ +  ++VIS +++ PFM++GMPRPVRA  AE
Subjt:  MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAE

Query:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET---LAQGMKE-EKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVF
          MF D+P KPG  + F W+  NDPDF  A+++K   RKH+AE    L + ++E EKL+KQQ E    ++KK E+++ ++ DG A++LA  YD++ F
Subjt:  VEMFDDRPIKPGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAET---LAQGMKE-EKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVF

Sequences

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CDS sequence

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ATGGGATCAGCTACGGAGGAGCAATTTGCTGCCTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAACCTCTCTCCTCAAGTGACTGAGCCTGTCATGAGAACTGC
TTTAGATCAGTTTGGAACTGTTGTCAGGGTCCAATTTATTCCAAACTACATGGAGCCATTGAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGACTCGAAGGAGGCCA
AATCCGTGATTTCAGTGATAGCCGAGTTCCCGTTCATGATTTCTGGAATGCCAAGACCGGTGAGGGCACTCCCTGCAGAAGTGGAAATGTTTGATGATCGCCCGATAAAG
CCTGGTAGCAAGATTAGCTTTTCCTGGCTGGATCAGAATGATCCTGATTTTCAAGTTGCAAAGAAAATGAAGCTTTTTACAAGGAAACACGCCGCGGAAACTCTTGCTCA
AGGCATGAAAGAGGAGAAGCTGGCAAAGCAGCAACAAGAAGTACTGAAAGGAAACTACAAGAAACATGAGATTGTAGAAAGTGTGATGACTGATGGAACTGCTCGCAGGT
TAGCAAAATGTTATGATATGAGAGTTTTTGATGAT

mRNA sequence

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Protein sequence

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MGSATEEQFAAFEEKVKRTVYVDNLSPQVTEPVMRTALDQFGTVVRVQFIPNYMEPLNSSQCALVEMKDSKEAKSVISVIAEFPFMISGMPRPVRALPAEVEMFDDRPIK
PGSKISFSWLDQNDPDFQVAKKMKLFTRKHAAETLAQGMKEEKLAKQQQEVLKGNYKKHEIVESVMTDGTARRLAKCYDMRVFDD

MS000646 (gene) of Bitter gourd (TR) v1 genome