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MS000652 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS000652
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold93:1043671..1043775
RNA-Seq ExpressionMS000652
SyntenyMS000652
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]4.0e-0762.86Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
        WIP++YEKLPDFCY CGR+GHV+++C+   D+G+E
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
MBA0743467.1 hypothetical protein [Gossypium gossypioides]2.2e-0560Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
        WIP+ YE  P FC+GCGR+GH IKDC    DE  E
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
MBA0878137.1 hypothetical protein [Gossypium schwendimanii]1.9e-0469.23Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDC
        WIP  YEKLP FC+GCGRLGH +++C
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDC
MBA0881349.1 hypothetical protein [Gossypium schwendimanii]1.1e-0460Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
        WIP  YE LP FC+GCGR+GH IKDC    +E  E
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
OMO81698.1 Zinc finger, CCHC-type [Corchorus capsularis]8.4e-0564.52Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDD
        W+   YE+LPDFC+ CGRLGHV KDC+  DD
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDD
TrEMBL top hitse value%identityAlignment
A0A1R3IGI2 Zinc finger, CCHC-type4.1e-0564.52Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDD
        W+   YE+LPDFC+ CGRLGHV KDC+  DD
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDD
A0A2N9J298 CCHC-type domain-containing protein3.1e-0580.77Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDC
        WIP  YEKL +FCYGCGRLGH IKDC
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDC
A0A5D3C0K2 Reverse transcriptase2.0e-0762.86Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
        WIP++YEKLPDFCY CGR+GHV+++C+   D+G+E
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
A0A7J9C4Y2 CCHC-type domain-containing protein1.1e-0560Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
        WIP+ YE  P FC+GCGR+GH IKDC    DE  E
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
A0A7J9NFL9 CCHC-type domain-containing protein5.3e-0560Show/hide
Query:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
        WIP  YE LP FC+GCGR+GH IKDC    +E  E
Subjt:  WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGATACCCATAACATACGAAAAGCTTCCAGATTTTTGTTATGGTTGTGGTAGACTTGGTCATGTGATAAAGGACTGTGAGACCAATGATGATGAAGGTGATGAA
mRNA sequenceShow/hide mRNA sequence
TGGATACCCATAACATACGAAAAGCTTCCAGATTTTTGTTATGGTTGTGGTAGACTTGGTCATGTGATAAAGGACTGTGAGACCAATGATGATGAAGGTGATGAA
Protein sequenceShow/hide protein sequence
WIPITYEKLPDFCYGCGRLGHVIKDCETNDDEGDE